FastQCFastQC Report
Fri 29 Sept 2023
SRR11712351_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR11712351_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17441382
Total Bases521.4 Mbp
Sequences flagged as poor quality0
Sequence length18-50
%GC67

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT184885810.600409990446858No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGC12507507.171163386020672No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCGC9832235.637299842409277No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT6002593.4415793427378634No Hit
TCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT5792083.3208836318131216No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC4008912.2985047859166206No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCG3758972.1552019214991107No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCG3093341.773563585729617No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCT2596501.488700838041389No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCC2447101.403042488261538No Hit
TCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC1723700.9882817772123792No Hit
TTACCCGTCGCCGCGCTCTCTCTCTCCCC1296060.7430947845761305No Hit
TCGTTTTTTCACTGACCCGGTGAGGCGGGG1183530.6785758146917487No Hit
TCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTT1153020.6610829348270681No Hit
TGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC1101970.6318134652403118No Hit
CCCGCCGAGGGCGCACCACCGGCCCGTCTCGC1068470.6126062716819114No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGC922150.5287138370113101No Hit
TCGCCGAGGGCGCACCACCGGCCCGTCTCGC885840.50789553259025No Hit
ATGGGGGGGGGATGCGTGCATTTATCAGA863700.49520158436986245No Hit
TTACCCGTCGCCGCGCTCTCCCTCTCCCC832370.4772385582747973No Hit
TGCCGCCTGGATACCGCAGCTAGGAATAATGGAA762170.43698945416137325No Hit
TCCCGGGGCTACGCCTGTCTGAGCGTCGCT758290.4347648598029674No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAA746250.4278617371031722No Hit
TTACCCGTCGCCGCGCTCTCTCTCTCCC731830.41959404363713837No Hit
CCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT693500.39761757411195975No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGC675840.38749222968684477No Hit
TGCCGCCTGGATACCGCAGCTAGGAATAATGGAAT668130.3830717084231055No Hit
CGTTTTTTCACTGACCCGGTGAGGCGGGG655330.3757328404366122No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAAT638960.366347116300761No Hit
GCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT596270.3418708448676831No Hit
ACCACCGGCCCGTCTCGC538930.308995009684439No Hit
TTACCCGTCGCCGCGCTCTCCCTCTCCC517090.29647306618248487No Hit
TCAACTTCTTAGAGGGAC516130.29592265108349786No Hit
TTCCCGGGGCTACGCCTGTCTGAGCGTCGCT505260.289690346785593No Hit
GTGGGGGGGCCCAAGTCCTTCTGATCGAGGCC504070.28900806140247376No Hit
ACTGACCCGGTGAGGCGGGG490240.2810786438826923No Hit
ACTCCCGGGGCTACGCCTGTCTGAGCGTCGCT481060.2758152994986292No Hit
ATGGGGGGGGATGCGTGCATTTATCAGA473400.2714234456879621No Hit
TCTCGCCCGTCACGTTGAACGCACGTTCG420320.2409900775064728No Hit
TGGGGGGGGGATGCGTGCATTTATCAGA420050.24083527325988274No Hit
GTTGAACCCCATTCGTGATGGGGATCGGGGATT398840.22867453966663878No Hit
TACCCGTCGCCGCGCTCTCTCTCTCCCC380900.2183886575043193No Hit
TTCCGCCGAGGGCGCACCACCGGCCCGTCTCGC375500.2152925725725175No Hit
TCGTGGGGGGCCCAAGTCCTTCTGATCGAGGC366980.2104076385690079No Hit
TCGACGAAGCCGAGCGCACGGGGTCGGCGGCGAT348380.19974334602613483No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTT344700.19763342148001803No Hit
CCCGCCGAGGGCGCACCACCGGCCCGTCTCG332930.19088510302681289No Hit
TCGACTGCATAATTTGTGGTAGTGGGG321230.1841769190079089No Hit
TCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTT305480.17514667129015352No Hit
TGTGGGGGGCCCAAGTCCTTCTGATCGAGGC296200.16982599199994586No Hit
GTCTAGCGGTTAGGATTCCTGG293450.1682492820809727No Hit
TCTCGCCCGTCACGTTGAACGCACGTTC286790.16443077733175043No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCAC284560.16315220892472856No Hit
GCCGCCGAGGGCGCACCACCGGCCCGTCTCGC284440.1630834070373552No Hit
TTGGGGGGCCCAAGTCCTTCTGATCGAGGCC283190.1623667207105492No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTC280550.16085307918833497No Hit
CCGCCTGGATACCGCAGCTAGGAATAATGGAAT248980.14275244931852304No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCAC247820.1420873644072471No Hit
TGGATGGTTTAGTGAGGCCCTCGGATCGGCC244930.14043038561967167No Hit
TAGCCCGTGGACGGTGTGAGGCCGGTAGCGGCCCCCG236380.1355282511443187No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCA234730.13458222519293483No Hit
TCGCCGAGGGCGCACCACCGGCCCGTCTCG234520.13446182189003142No Hit
CCGCCTGGATACCGCAGCTAGGAATAATGGAA230620.13222576055039675No Hit
TTACCCGTCGCCGCGCTCTCTCTCTCCCCC218760.12542584068166157No Hit
TCGCTGAGAAGACGGTCGAACTTGACTATCT218730.12540864020981823No Hit
TCGACGAAGCCGAGCGCACGGGGTCGGCGGCGA216580.12417593972771195No Hit
TACCCGTCGCCGCGCTCTCCCTCTCCCC213670.1225074939589076No Hit
ACCGCCGAGGGCGCACCACCGGCCCGTCTCGC207010.11868898920968535No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCA206580.11844244911326407No Hit
TATTCGAACGTCTGCCCTATC206140.11819017552622836No Hit
TACCCGTCGCCGCGCTCTCTCTCTCCC204640.11733015193406118No Hit
TCGACTGCATAATTTGTGGTAGTGGGGG197270.11310456935121312No Hit
TTTTGGTGACTCTAGATAACCTCGGGCCGATCGC195520.11210120849368473No Hit
GCCGCCTGGATACCGCAGCT193340.11085130753973509No Hit
CTCGCCCGTCACGTTGAACGCACGTTCG192980.11064490187761497No Hit
TCCTCGGTTGGCCCCGGATAGCCGGGTCCCCG187860.10770935468301768No Hit
TGTCCGCCGAGGGCGCACCACCGGCCCGTCTCGC177930.10201599850287094No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTC176010.10091516830489694No Hit
TCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTC174850.10025008339362099No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)