FastQCFastQC Report
Fri 29 Sept 2023
SRR11712352_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR11712352_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15516921
Total Bases447.5 Mbp
Sequences flagged as poor quality0
Sequence length18-50
%GC67

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGCCGAGGGCGCACCACCGGCCCGTCTCGC12448948.022815866627148No Hit
TCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT11231897.238478561565145No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCGC6649374.285238031436778No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT6017013.877708728426213No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCG4406462.8397772986019585No Hit
TCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT3782942.4379450021044766No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC3372182.173227536571205No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCG2430441.5663158947577294No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCT2374841.5304840438383362No Hit
ACTGACCCGGTGAGGCGGGG1864511.2015979201028348No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCC1473070.9493313783063019No Hit
CCCGCCGAGGGCGCACCACCGGCCCGTCTCGC1111200.7161214521875828No Hit
ACCACCGGCCCGTCTCGC1079210.6955052487539248No Hit
TCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC775090.49951275771784875No Hit
TTACCCGTCGCCGCGCTCTCTCTCTCCCC743330.47904477956677105No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAA702810.45293135152263775No Hit
CCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT698230.4499797350260403No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGC690770.44517208020843824No Hit
TGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC649560.4186139763165644No Hit
TCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTT629480.4056732646895605No Hit
ATGGGGGGGGGATGCGTGCATTTATCAGA615820.39686997181979594No Hit
TGCCGCCTGGATACCGCAGCTAGGAATAATGGAA611730.3942341396208694No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAAT611210.393899021590688No Hit
GCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT578100.3725610254766394No Hit
TCGCCGAGGGCGCACCACCGGCCCGTCTCGC563700.36328083387161664No Hit
CGTTTTTTCACTGACCCGGTGAGGCGGGG557590.3593431970169855No Hit
GTTGAACCCCATTCGTGATGGGGATCGGGGATT549200.3539361964915591No Hit
TGCCGCCTGGATACCGCAGCTAGGAATAATGGAAT542430.3495732175216978No Hit
ATGGGGGGGGATGCGTGCATTTATCAGA512040.32998814648859787No Hit
TCGTTTTTTCACTGACCCGGTGAGGCGGGG479110.30876615276961195No Hit
TTACCCGTCGCCGCGCTCTCCCTCTCCCC460760.29694035305071154No Hit
TTACCCGTCGCCGCGCTCTCTCTCTCCC442750.2853336689669297No Hit
TCAACTTCTTAGAGGGAC422110.2720320609997306No Hit
TCCCGGGGCTACGCCTGTCTGAGCGTCGCT422040.27198694895720615No Hit
CCCGCCGAGGGCGCACCACCGGCCCGTCTCG410220.2643694583480834No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGC370060.23848803509407568No Hit
TGGGGGGGGGATGCGTGCATTTATCAGA349430.22519287170438002No Hit
GTCTAGCGGTTAGGATTCCTGG344450.221983472107643No Hit
GCCGCCGAGGGCGCACCACCGGCCCGTCTCGC314870.2029204118523256No Hit
TTCCCGGGGCTACGCCTGTCTGAGCGTCGCT311290.20061325310607692No Hit
CCGCCGAGGGCGCACCACCGGCCCGT308270.19866699070002353No Hit
GTGGGGGGGCCCAAGTCCTTCTGATCGAGGCC308010.19849943168493284No Hit
TCTCGCCCGTCACGTTGAACGCACGTTCG306940.19780986189205962No Hit
ACTCCCGGGGCTACGCCTGTCTGAGCGTCGCT303240.1954253682157691No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTT295690.1905597122006357No Hit
TTACCCGTCGCCGCGCTCTCCCTCTCCC293280.1890065690222951No Hit
AAGTCCTTCTGATCGAGGCC276800.1783859052965469No Hit
TACCCGTCGCCGCGCTCTCTCTCTCCCC274340.1768005392306889No Hit
CGAGGGCGCACCACCGGCCCGTCTCGC271590.17502828041722968No Hit
ACGCCTGTCTGAGCGTCGCT267860.17262445300842866No Hit
TTCCGCCGAGGGCGCACCACCGGCCCGTCTCGC264820.17066530144736833No Hit
TCGACGAAGCCGAGCGCACGGGGTCGGCGGCGAT247390.1594324028587888No Hit
AAGTCCTTCTGATCGAGGC240140.15476008416876003No Hit
AGCTAGGAATAATGGAAT239860.15457963599866237No Hit
TCTCGCCCGTCACGTTGAACGCACGTTC234120.15088044851166027No Hit
ACCGCAGCTAGGAATAATGGAA224030.14437786981064094No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGC217820.14037578718097488No Hit
TATTCGAACGTCTGCCCTATC216400.1394606571754796No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTC211780.13648326236886815No Hit
CTCGCCCGTCACGTTGAACGCACGTTCG210480.13564546729341473No Hit
CCTCCCCTCTTCCCCGCGG208330.13425988313016482No Hit
TACTGACCCGGTGAGGCGGGG205410.13237806649914632No Hit
TCGCCGAGGGCGCACCACCGGCCCGTCTCG197330.12717084787632804No Hit
CCGCCTGGATACCGCAGCTAGGAATAATGGAAT197130.12704195632625828No Hit
ACCGCAGCTAGGAATAATGGAAT194400.12528258666780606No Hit
TGTCCGCCGAGGGCGCACCACCGGCCCGTCTCGC190420.12271764482141787No Hit
CCCGCGGACGCTACGCCGCGACGAGT188950.12177029192840512No Hit
CTAAACCATTCGTAGACGACCTGCTT187100.12057804509025985No Hit
TATTCGAACGTCTGCCCT184650.11899912360190532No Hit
CCGCCTGGATACCGCAGCTAGGAATAATGGAA183070.11798088035635419No Hit
TCCGCCGAGGGCGCACCACCGGCCCGT179460.11565438787759505No Hit
GCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT175910.11336656286385681No Hit
CACTGACCCGGTGAGGCGGGG175520.11311522434122077No Hit
AGTGAGGCCCTCGGATCGGCC174700.11258676898593478No Hit
TCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTT170690.1100024934070361No Hit
TGGATGGTTTAGTGAGGCCCTCGGATCGGCC166680.10741821782813742No Hit
CTCCCGGGGCTACGCCTGT163780.10554929035212592No Hit
TACCCGTCGCCGCGCTCTCTCTCTCCC158390.10207566307774589No Hit
TGTGGGGGGCCCAAGTCCTTCTGATCGAGGC157620.10157943060997733No Hit
TCGACGAAGCCGAGCGCACGGGGTCGGCGGCGA156870.10109608729721573No Hit
TCGCTGAGAAGACGGTCGAACTTGACTATCT155530.10023251391174835No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)