FastQCFastQC Report
Fri 29 Sept 2023
SRR11712353_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR11712353_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13238234
Total Bases394 Mbp
Sequences flagged as poor quality0
Sequence length18-50
%GC60

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT7368545.566104965360183No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCGC2810142.122745375251714No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCAC2491641.8821543719502163No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCAC2450691.8512212429543096No Hit
TCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT2247501.6977340028889052No Hit
TCGTTTTTTCACTGACCCGGTGAGGCGGGG1698731.2831998588331344No Hit
TTACCCGTCGCCGCGCTCTCTCTCTCCCC1474251.11363041324092No Hit
TCAACTTCTTAGAGGGAC1393171.05238357321679No Hit
TCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC1382341.0442027237167737No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCG1342871.0143875686137591No Hit
TTACCCGTCGCCGCGCTCTCCCTCTCCCC1240050.9367185985683588No Hit
TTTTGGTGACTCTAGATAACCTCGGGCCGATCGCAC1201540.9076286157201935No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGC1033670.780821671531112No Hit
TTACCCGTCGCCGCGCTCTCTCTCTCCC905680.6841395914288869No Hit
TTTTGGTGACTCTAGATAACCTCGGGCCGATCGCA826920.6246452510206422No Hit
TGCCGCCTGGATACCGCAGCTAGGAATAATGGAAT807080.6096583577537608No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCA748260.5652264493889442No Hit
ATGGGGGGGGATGCGTGCATTTATCAGA744610.5624692840449866No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCA735340.5554668394591001No Hit
TTACCCGTCGCCGCGCTCTCCCTCTCCC707010.534066704063397No Hit
TAGCCCGTGGACGGTGTGAGGCCGGTAGCGGCCCCCG660830.4991828970540934No Hit
TCGCCGAGGGCGCACCACCGGCCCGTCTCGC616110.46540195618237296No Hit
TCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTT565600.4272473201485939No Hit
ATGGGGGGGGGATGCGTGCATTTATCAGA535390.40442705575381127No Hit
TCGACTGCATAATTTGTGGTAGTGGGG534710.40391339207329313No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT507760.3835556917939356No Hit
TCCTCGGTTGGCCCCGGATAGCCGGGTCCCCG505210.38162945299199275No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCG464360.35077186277263267No Hit
TGCCGCCTGGATACCGCAGCTAGGAATAATGGAA454060.3429913687883142No Hit
TCCCGGGGCTACGCCTGTCTGAGCGTCGCT442130.33397959274628325No Hit
TCGTGGGGGGCCCAAGTCCTTCTGATCGAGGC421740.31857723620839457No Hit
TCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTC413780.3125643495952708No Hit
TTTTGGTGACTCTAGATAACCTCGGGCCGATCGC397810.3005008069807498No Hit
TCGACGAAGCCGAGCGCACGGGGTCGGCGGCGAT374250.28270387122632823No Hit
TCGACGAAGCCGAGCGCACGGGGTCGGCGGCGA341590.25803290680614954No Hit
TCAACTTCTTAGAGGGACAAGTGGCGTT326820.24687582951018996No Hit
TCCTCGGTTGGCCCCGGATAGCCGGGTCCC324800.245349946223945No Hit
TCAACTTCTTAGAGGGACAAGTGGCGTTC323330.24423952620870729No Hit
TCGTTTCCCGGTCAGGGA316730.23925396695661977No Hit
TCGGCGACGACCCATTCGAACGTCTGCCCTATC308670.2331655415669492No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC306210.23130728766389838No Hit
TCGCCGAGGGCGCACCACCGGCCCGTCTCG304570.23006845172853116No Hit
ATTGATCATCGACACTTCGAACGCA302330.22837638313388328No Hit
CTAAACCATTCGTAGACGACCTGCTT300050.22665409902861666No Hit
TCTCGCCCGTCACGTTGAACGCACGTTC299720.22640482106601229No Hit
TCGTCGCGGCGTGGGAAATGTGGCGTACGGAAG290870.21971963934162217No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCT284630.215006019685103No Hit
TTCCCGGGGCTACGCCTGTCTGAGCGTCGCT277070.20929528817816637No Hit
TCTCGCCCGTCACGTTGAACGCACGTTCG266300.20115976194407803No Hit
TACCCGTCGCCGCGCTCTCTCTCTCCCC265310.2004119280562649No Hit
TCGTCGCGGCGTGGGAAATGTGGCGTACG262670.19841770435542988No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGC260180.19653678881941503No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGC257280.1943461642995584No Hit
TCGCTGAGAAGACGGTCGAACTTGACTATCT254130.19196669283833478No Hit
TCGCGCCGGGCCGTACCCATATCCGCAGC249030.18811421523444893No Hit
TTGGGGAAGGTGGCTCGGGGGG244470.18466964702391572No Hit
TCGCTGCGATCTATTGAAAGTCAGCCCTCGACACA244250.18450346171551282No Hit
TTACCCGTCGCCGCGCTCTCTCTCTCCCCC235780.17810532734200044No Hit
ATTGATCATCGACACTTCGAACGCAC227330.17172230072379746No Hit
TCGCGCCGGGCCGTACCCATATCCGC220830.16681228024825667No Hit
CCGCCTGGATACCGCAGCTAGGAATAATGGAAT217460.16426662347863016No Hit
TCCGCCTGGATACCGCAGCTAGGAATAATGGAAT209980.15861632299293094No Hit
TGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC205430.1551793086600524No Hit
TAGTGACGAAAAATAACAATACAGGA205300.15508110825054158No Hit
TCTAAACCATTCGTAGACGACCTGCTT203120.15343436292182175No Hit
TATTCGAACGTCTGCCCTATC200580.15151567799753352No Hit
TTGGGGGGCCCAAGTCCTTCTGATCGAGGCC196880.1487207432653026No Hit
TACCCGTCGCCGCGCTCTCCCTCTCCCC191370.14455855667757497No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCC189310.14300245788071128No Hit
TCGACTGCATAATTTGTGGTAGTGGGGG187800.14186182235485487No Hit
TCGTCGCGGCGTGGGAAATGTGGCGTACGGAAGA186750.1410686652011137No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAAT184290.13921041129806286No Hit
TCGTCGCGGCGTGGGAAATGTGGCGTACGGAA166690.12591558662582938No Hit
TAACCTCGGGCCGATCGCAC165900.12531883029110982No Hit
TACCCGTCGCCGCGCTCTCTCTCTCCC160900.12154189146377078No Hit
TCGGGTTGCTTGGGAATGCAGCCCAAAGC152990.1155667742389204No Hit
TAGCCCGTGGACGGTGTGAGGCCGGTAGCGGCCCCCGG149230.11272651624076142No Hit
TCGCTTCTGGCGCCAAGCGTCCG149000.11255277705470382No Hit
TCAACTTCTTAGAGGGACAAGTGGCGT146470.11064164600807025No Hit
TCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTT145730.1100826590616241No Hit
TCGCGGCGTGGGAAATGTGGCGTACG140400.10605644227168064No Hit
TCGCCCGTCACGTTGAACGCACGTTCG137860.10413775734739242No Hit
ACCCGTCGCCGCGCTCTCCCTCTCCCC136310.1029669063109173No Hit
TCGACGTACGCAGTTTTATCCGGTAAAGC134320.10146368465763636No Hit
CGTTTTTTCACTGACCCGGTGAGGCGGGG132580.10014930994572237No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)