FastQCFastQC Report
Wed 30 Aug 2023
SRR11728138_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR11728138_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22032519
Total Bases641.1 Mbp
Sequences flagged as poor quality0
Sequence length6-48
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGGCTGAGGCGTGATGACGAGGCAC18720008.496531876359667No Hit
TAAGGCTGAGGCGTGATGACGAGGCAC6196162.8122794311444825No Hit
TATTCATCTCCGGGGGTAGAGCACTGTTTCGGC5648722.5638103387088873No Hit
AAAGGCTGAGGCGTGATGACGAGGCAC4616352.0952438529611617No Hit
AAGGCTGAGGCGTGATGACGAGGCACT4125721.872559374622575No Hit
ATGTACACGGAGTCGACCCGCAACGCGA1576120.7153607810346152No Hit
TAAGGCTGAGGCGTGATGACGAGGCACT1312150.5955515118357552No Hit
TAGGCTGAGGCGTGATGACGAGGCAC1249500.567116270273045No Hit
TATTCATCTCCGGGGGTAGAGCACTGTTTCGGCA1058400.4803808407018734No Hit
AAAGGCTGAGGCGTGATGACGAGGCACT980310.44493777583943084No Hit
TACGCTTTAGCAGCTTAATAACCTGCTT961460.4363822402694853No Hit
ACGCTTTAGCAGCTTAATAACCTGCTT915960.41573094751444445No Hit
AGCGCACGCAGGCGGTTTGTTAAGTCAGATGTG803910.36487430238911855No Hit
AAGGCTGAGGCGTGATGACGAGGCA694980.3154337459098526No Hit
CATTCATCTCCGGGGGTAGAGCACTGTTTCGGC652070.29595798828086795No Hit
CAAGGCTGAGGCGTGATGACGAGGCAC565230.25654352096553285No Hit
ACGGGGCTAAACCATGCACCGAAGCTGCGGCAGCG515390.2339224125938573No Hit
AATTCATCTCCGGGGGTAGAGCACTGTTTCGGC509140.23108569655607694No Hit
AGCGGGGAGGAAGGGAGTAAAG474020.21514562179658167No Hit
AGGGGGGCTGCTCCTAGTACGAGAGGACCGGAGTGG417200.1893564689539131No Hit
GCGGGAGTGGCGAAATTGGTAGACGCACCAGA384460.17449661566160457No Hit
TAAGCGCACGCAGGCGGTTTGTTAAGTCAGATGTG347150.15756255560247107No Hit
AGGTTAATGAGGCGAACCGGGGG345060.15661395775943732No Hit
GATTCATCTCCGGGGGTAGAGCACTGTTTCGGC344530.15637340423943355No Hit
ACCGCCAGCTAAGGTCCCAAAGTCATGG343820.15605115329754168No Hit
AGCGCACGCAGGCGGTTTGTTAAGTCAGATG329210.1494200458876264No Hit
TAGGCTGAGGCGTGATGACGAGGCACT299140.1357720376866576No Hit
GAAGGCTGAGGCGTGATGACGAGGCAC281800.12790185271143983No Hit
ATCTCCGGGGGTAGAGCACTGTTTCGGC279140.12669454636576052No Hit
GCGAAGGTGGCGGAATTGGTAGACGCGCTAGCT273970.12434801485930863No Hit
TTAGGTTAATGAGGCGAACCGGGGG266880.12113004418605063No Hit
TTGCATCTGATACTGGCAAGCTTGAGTCTCGTAG264430.12001805149924073No Hit
TAAGGCTGAGGCGTGATGACGAGGCA254840.11566539441087058No Hit
CGGTGATTGGCGCAGCCTGGTAGCGCACTTCGTT253880.11522967482746752No Hit
TTAAGGCTGAGGCGTGATGACGAGGCAC253780.11518428737086303No Hit
TAGCGCACGCAGGCGGTTTGTTAAGTCAGATGTG248270.1126834385119559No Hit
AAAACCATGCACCGAAGCTGCGGCAGCG235490.10688292155790267No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)