FastQCFastQC Report
Wed 30 Aug 2023
SRR11728140_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR11728140_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences47805182
Total Bases1.3 Gbp
Sequences flagged as poor quality0
Sequence length6-49
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGGCTGAGGCGTGATGACGAGGCAC613399412.831232396521363No Hit
TATTCATCTCCGGGGGTAGAGCACTGTTTCGGC17788583.721056851117103No Hit
TAAGGCTGAGGCGTGATGACGAGGCAC14691073.0731124504452256No Hit
AAGGCTGAGGCGTGATGACGAGGCACT11152792.3329667482491754No Hit
AAAGGCTGAGGCGTGATGACGAGGCAC11094022.3206731019243896No Hit
ATTCATCTCCGGGGGTAGAGCACTGTTTCGGC4797931.0036422411277506No Hit
TAGGCTGAGGCGTGATGACGAGGCAC3901500.8161249129853746No Hit
AAGGCTGAGGCGTGATGACGAGGCA3491810.7304249986957481No Hit
TAAGGCTGAGGCGTGATGACGAGGCACT2594150.5426503762709239No Hit
CATTCATCTCCGGGGGTAGAGCACTGTTTCGGC2375510.49691474869816415No Hit
TATTCATCTCCGGGGGTAGAGCACTGTTTCGGCA2238220.4681961047653788No Hit
ATGTACACGGAGTCGACCCGCAACGCGA2079680.43503233603419816No Hit
AAAGGCTGAGGCGTGATGACGAGGCACT1956500.40926525496754723No Hit
AATTCATCTCCGGGGGTAGAGCACTGTTTCGGC1657060.34662769404371263No Hit
AAGGCTGAGGCGTGATGACGAGGC1607330.3362250561037504No Hit
ATCTCCGGGGGTAGAGCACTGTTTCGGC1605840.3359133744120041No Hit
CAAGGCTGAGGCGTGATGACGAGGCAC1487210.31109807300806847No Hit
GATTCATCTCCGGGGGTAGAGCACTGTTTCGGC1183030.24746898777626242No Hit
TATTCATCTCCGGGGGTAGAGCACTGTTTCGGCAAGGG1076430.2251701499640771No Hit
AGGCTGAGGCGTGATGACGAGGCAC963660.20158065709278125No Hit
TAAGGCTGAGGCGTGATGACGAGGCA893500.18690442387605596No Hit
GAAGGCTGAGGCGTGATGACGAGGCAC730710.15285163018519624No Hit
TAGGCTGAGGCGTGATGACGAGGCACT715750.14972226232712596No Hit
GCGGGAGTGGCGAAATTGGTAGACGCACCAGA669790.1401082418219849No Hit
AAAGGCTGAGGCGTGATGACGAGGCA663680.1388301377034816No Hit
GCGAAGGTGGCGGAATTGGTAGACGCGCTAGC648220.13559617867368437No Hit
AGCGCACGCAGGCGGTTTGTTAAGTCAGATGTG585510.12247835391569056No Hit
ATTCATCTCCGGGGGTAGAGCACTGTTTCGGCA579180.1211542296816274No Hit
TATTCATCTCCGGGGGTAGAGCA561530.11746216131966615No Hit
GCGAAGGTGGCGGAATTGGTAGACGCGCTAGCT525810.10999016801149297No Hit
TATTCATCTCCGGGGGTAGAGCACTGTTTCGGCAAGGGG504480.10552830862562138No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)