FastQCFastQC Report
Wed 30 Aug 2023
SRR11728141_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR11728141_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19004981
Total Bases544.4 Mbp
Sequences flagged as poor quality0
Sequence length6-48
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGGCTGAGGCGTGATGACGAGGCAC18889209.939078602604233No Hit
TATTCATCTCCGGGGGTAGAGCACTGTTTCGGC7469563.9303170047894285No Hit
TAAGGCTGAGGCGTGATGACGAGGCAC4488762.3618860760765825No Hit
AAAGGCTGAGGCGTGATGACGAGGCAC3342851.7589336185076954No Hit
AAGGCTGAGGCGTGATGACGAGGCACT2857471.503537414744061No Hit
ATTCATCTCCGGGGGTAGAGCACTGTTTCGGC2147451.1299406192513426No Hit
TAGGCTGAGGCGTGATGACGAGGCAC1164890.612939313120071No Hit
TATTCATCTCCGGGGGTAGAGCACTGTTTCGGCA1020060.5367329754236534No Hit
AAGGCTGAGGCGTGATGACGAGGCA994610.5233417491972236No Hit
ATCTCCGGGGGTAGAGCACTGTTTCGGC988760.520263608787612No Hit
CATTCATCTCCGGGGGTAGAGCACTGTTTCGGC960150.5052096605621442No Hit
AATTCATCTCCGGGGGTAGAGCACTGTTTCGGC699400.36800878674911597No Hit
TAAGGCTGAGGCGTGATGACGAGGCACT657530.34597772026186185No Hit
GATTCATCTCCGGGGGTAGAGCACTGTTTCGGC608820.32034759729567736No Hit
TATTCATCTCCGGGGGTAGAGCACTGTTTCGGCAAGGG513440.270160754172814No Hit
AAAGGCTGAGGCGTGATGACGAGGCACT487920.2567326954970384No Hit
AAGGCTGAGGCGTGATGACGAGGC468550.24654063058521342No Hit
CAAGGCTGAGGCGTGATGACGAGGCAC441790.23246011137816974No Hit
GCGGGAGTGGCGAAATTGGTAGACGCACCAGA396720.20874527577796576No Hit
AGGCTGAGGCGTGATGACGAGGCAC312050.16419379740500661No Hit
ATTCATCTCCGGGGGTAGAGCACTGTTTCGGCA285440.15019220487513246No Hit
GCCGAGGTGGTGGAATTGGTAGACACGCTACC266100.14001592529874143No Hit
TAAGGCTGAGGCGTGATGACGAGGCA251030.1320864251324429No Hit
GAAGGCTGAGGCGTGATGACGAGGCAC238780.12564074649693152No Hit
GCGGGAGTGGCGAAATTGGTAGACGCACCAG228110.12002642886093913No Hit
AGCGCACGCAGGCGGTTTGTTAAGTCAGATGTG222740.11720085381827007No Hit
TATTCATCTCCGGGGGTAGAGCACTGTTTCGGCAAGG212760.11194959889725752No Hit
GCGAAGGTGGCGGAATTGGTAGACGCGCTAGC203330.10698774179253323No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)