FastQCFastQC Report
Wed 9 Aug 2023
SRR11728142_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR11728142_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences25706349
Total Bases726.1 Mbp
Sequences flagged as poor quality0
Sequence length6-48
%GC58

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGGCTGAGGCGTGATGACGAGGCAC634201924.671021933141887No Hit
TAAGGCTGAGGCGTGATGACGAGGCAC21054508.190389074699016No Hit
AAAGGCTGAGGCGTGATGACGAGGCAC15715116.113318542434789No Hit
TATTCATCTCCGGGGGTAGAGCACTGTTTCGGC10899414.239968110601781No Hit
TAGGCTGAGGCGTGATGACGAGGCAC4954721.927430456966098No Hit
AAGGCTGAGGCGTGATGACGAGGCACT3579291.3923758679227456No Hit
AAGGCTGAGGCGTGATGACGAGGCA3180471.2372313158900938No Hit
CAAGGCTGAGGCGTGATGACGAGGCAC1908970.7426064276961306No Hit
TATTCATCTCCGGGGGTAGAGCACTGTTTCGGCA1863210.724805377846539No Hit
CATTCATCTCCGGGGGTAGAGCACTGTTTCGGC1289290.5015453575301573No Hit
ATGTACACGGAGTCGACCCGCAACGCGA1177510.4580619363722168No Hit
TAAGGCTGAGGCGTGATGACGAGGCA1171280.4556384105732012No Hit
TAAGGCTGAGGCGTGATGACGAGGCACT1147610.44643056857276775No Hit
TACGCTTTAGCAGCTTAATAACCTGCTT1069770.4161501113985498No Hit
ACGCTTTAGCAGCTTAATAACCTGCTT993970.38666323249559864No Hit
GAAGGCTGAGGCGTGATGACGAGGCAC973180.37857573628989477No Hit
AATTCATCTCCGGGGGTAGAGCACTGTTTCGGC965400.37554924660829897No Hit
AGCGGGGAGGAAGGGAGTAAAG941090.3660924388757034No Hit
TTAAGGCTGAGGCGTGATGACGAGGCAC869940.33841445162049266No Hit
AAAGGCTGAGGCGTGATGACGAGGCA856660.33324841267812866No Hit
AAAGGCTGAGGCGTGATGACGAGGCACT851510.3312450165521366No Hit
AAGGCTGAGGCGTGATGACGAGGC795390.3094138339131706No Hit
ACGCGAAGCTCTTGATCGAAGCCCCGGTAAACGGCGGCCG751200.29222352812528923No Hit
GATTCATCTCCGGGGGTAGAGCACTGTTTCGGC674880.26253436456495627No Hit
TATTCATCTCCGGGGGTAGAGCACTGTTTCGG626160.24358184820411485No Hit
AGGGGGGCTGCTCCTAGTACGAGAGGACCGGAGTGG595790.23176764619510923No Hit
ACCGCCAGCTAAGGTCCCAAAGTCATGG595340.23159259216468273No Hit
AGGCTGAGGCGTGATGACGAGGCAC587280.22845717997526604No Hit
CAGGCTGAGGCGTGATGACGAGGCAC571320.22224859702947314No Hit
ACGCGAAGCTCTTGATCGAAGCCCCGGTAAACGGCGGCCGT508750.19790830662106082No Hit
TGGGGCTGATTCTGGATTCGACGGG502820.19560148350899614No Hit
AAAACCATGCACCGAAGCTGCGGCAGCG500880.19484680613337974No Hit
AGACCGCCAGCTAAGGTCCCAAAGTCATGGT478010.18595017129814895No Hit
ACGGGGCTAAACCATGCACCGAAGCTGCGGCAGCG414380.16119753139584309No Hit
GAGGCTGAGGCGTGATGACGAGGCAC374660.1457460956435315No Hit
AGGTTAATGAGGCGAACCGGGGG357760.13917184427862547No Hit
ACTTGCCCCGAGATGAGTTCTCCCTGACTCC352400.13708675627176772No Hit
ATTCATCTCCGGGGGTAGAGCACTGTTTCGGC348270.13548014928140903No Hit
AGGCTTGTAGCTCAGGTGGTTAGAGCGCACCCC347660.13524285381794202No Hit
AGTAGGTAGCTTAACCTTCGGGAGGG333000.12953998251560345No Hit
ATCTCCGGGGGTAGAGCACTGTTTCGGC332160.12921321499214067No Hit
AAGTAGGTAGCTTAACCTTCGGGAGGG318740.12399271479586618No Hit
TAAGGCTGAGGCGTGATGACGAGGC318450.12387990219848023No Hit
TGGGGCTGATTCTGGATTCGACGG317680.12358036530197268No Hit
TTAGGCTGAGGCGTGATGACGAGGCAC315900.12288792935939677No Hit
TTAGGTTAATGAGGCGAACCGGGGG314780.12245223932811306No Hit
ACCGCCAGCTAAGGTCCCAAAGTCATGGT311010.12098567556209558No Hit
AGACCGCCAGCTAAGGTCCCAAAGTCATGG307620.11966693519954934No Hit
GCATCCGTAGCTCAGCTGGATAGAGTACTCGGC302940.11784637328311383No Hit
TAGGCTGAGGCGTGATGACGAGGCACT300860.11703723465358695No Hit
TATTCATCTCCGGGGGTAGAGCACTGTTTCGGCAAGGG297790.11584297715712176No Hit
GGCTGAGGCGTGATGACGAGGCAC293390.1141313377485072No Hit
GGGGGCTGATTCTGGATTCGACGGG290120.11285927846074134No Hit
AAAACCATGCACCGAAGCTGCGGCAG279020.10854127904355458No Hit
TAGGCTGAGGCGTGATGACGAGGCA259420.10091670349608962No Hit
AGGTTAATGAGGCGAACCGGGGGAACTGA258020.10037209095698499No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)