FastQCFastQC Report
Wed 30 Aug 2023
SRR11728143_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR11728143_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23980193
Total Bases680.8 Mbp
Sequences flagged as poor quality0
Sequence length6-48
%GC58

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGGCTGAGGCGTGATGACGAGGCAC668208827.865030110474926No Hit
TAAGGCTGAGGCGTGATGACGAGGCAC15271446.368355750931613No Hit
AAAGGCTGAGGCGTGATGACGAGGCAC11473304.78449026661295No Hit
TATTCATCTCCGGGGGTAGAGCACTGTTTCGGC11197994.669683017146693No Hit
AAGGCTGAGGCGTGATGACGAGGCA4878812.034516569570562No Hit
TAGGCTGAGGCGTGATGACGAGGCAC4758941.984529482310672No Hit
ATTCATCTCCGGGGGTAGAGCACTGTTTCGGC3552671.481501837787544No Hit
AAGGCTGAGGCGTGATGACGAGGCACT3346631.3955809279766849No Hit
ACGCGAAGCTCTTGATCGAAGCCCCGGTAAACGGCGGCCG3122181.301982848928697No Hit
ACGCGAAGCTCTTGATCGAAGCCCCGGTAAACGGCGGCCGT2733861.1400492064430006No Hit
ATCTCCGGGGGTAGAGCACTGTTTCGGC1739100.7252235209282928No Hit
TATTCATCTCCGGGGGTAGAGCACTGTTTCGGCA1680820.7009201302091271No Hit
CATTCATCTCCGGGGGTAGAGCACTGTTTCGGC1481830.6179391466949411No Hit
CAAGGCTGAGGCGTGATGACGAGGCAC1478780.6166672636871605No Hit
AAGGCTGAGGCGTGATGACGAGGC1477850.616279443622493No Hit
AGGCTGAGGCGTGATGACGAGGCAC1283260.5351333077260888No Hit
ACGCGAAGCTCTTGATCGAAGCCCCGGTAAACGGCGGCC1252500.5223060548345044No Hit
TAAGGCTGAGGCGTGATGACGAGGCA1194000.49791092173444973No Hit
GGGGCTGATTCTGGATTCGACGGG1064450.44388716971543973No Hit
AATTCATCTCCGGGGGTAGAGCACTGTTTCGGC1046640.4364602069716453No Hit
ACGCGAAGCTCTTGATCGAAGCCCCGGTAAACGGCGGC914550.3813772474641885No Hit
GATTCATCTCCGGGGGTAGAGCACTGTTTCGGC913240.3808309632870761No Hit
AAAGGCTGAGGCGTGATGACGAGGCA868310.36209466704458965No Hit
GGGGCTGATTCTGGATTCGACGG825370.3441882223383273No Hit
GAAGGCTGAGGCGTGATGACGAGGCAC820030.3419613845476557No Hit
TAAGGCTGAGGCGTGATGACGAGGCACT722550.3013111695973423No Hit
GCCGACTTAGCTCAGTAGGTAGAGCAACTG638390.26621553879904136No Hit
TATTCATCTCCGGGGGTAGAGCACTGTTTCGG634500.2645933667005933No Hit
AAGGCTGAGGCGTGATGACGAGG599980.25019815311744986No Hit
GCCGACTTAGCTCAGTAGGTAGAGCAACTGA575240.23988130537564897No Hit
CAGGCTGAGGCGTGATGACGAGGCAC560310.23365533379985726No Hit
AAAGGCTGAGGCGTGATGACGAGGCACT539540.22499401902228225No Hit
ATTCATCTCCGGGGGTAGAGCACTGTTTCGGCA521760.21757956660315453No Hit
TATTCATCTCCGGGGGTAGAGCA483680.2016997944928967No Hit
AGCGAAGCTCTTGATCGAAGCCCCGGTAAACGGCGGCCGT462810.19299677863309941No Hit
TATTCATCTCCGGGGGTAGAGCACTGTTTCGGCAAGGGG458090.1910284875522061No Hit
GGCTGAGGCGTGATGACGAGGCAC455210.1898274963842034No Hit
GAGGCTGAGGCGTGATGACGAGGCAC437010.18223789941974194No Hit
TGGGGCTGATTCTGGATTCGACGGG436890.18218785812107516No Hit
GCCGACTTAGCTCAGTAGGTAGAGCAACTGAC424920.177196238579064No Hit
TATTCATCTCCGGGGGTAGAGCACTGTTTCGGCAAGGG420790.17547398388328234No Hit
TATTCATCTCCGGGGGTAGAGC405870.16925218241571283No Hit
ACGCGAAGCTCTTGATCGAAGCCCCGGT381390.15904375748768995No Hit
TAGGCTGAGGCGTGATGACGAGGCA345170.1439396255067672No Hit
TGGGGCTGATTCTGGATTCGACGG330030.13762608165830859No Hit
TAAGGCTGAGGCGTGATGACGAGGC328030.13679206001386227No Hit
GGGGGCTGATTCTGGATTCGACGGG304730.1270757078560627No Hit
TTAAGGCTGAGGCGTGATGACGAGGCAC299030.12469874616939071No Hit
TCCTCTGTAGTTCAGTCGGTAGAACGGCGGAC296290.12355613651649927No Hit
TCATCTCCGGGGGTAGAGCACTGTTTCGGC281700.1174719486202634No Hit
ATCTCCGGGGGTAGAGCACTGTTTCGGCA271120.1130599741211424No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)