FastQCFastQC Report
Fri 1 Sept 2023
SRR11943788_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR11943788_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences34254992
Total Bases5.1 Gbp
Sequences flagged as poor quality0
Sequence length150
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTGATTCTATGGGTGGTGGTGCATGGCCGTTCTTAGTTGGTGGAGCGAT1790350.5226537492695955No Hit
CAAATTTCTGCCCTATCAACTTTCGATGGTAGGATAGGGGCCTACCATGG1440560.42054016535750466No Hit
GTCAACGCGAGCTGATGACTCGCGCTTACTAGGCATTCCTCGTTGAAGAC1346720.3931456180167842No Hit
GTTTAAGCATATAAATAAGCGGAGGAGAAGAAACTTACGAGGATTCCCCT1339710.3910992009573378No Hit
CTGAGTTTAAGCATATAAATAAGCGGAGGAGAAGAAACTTACGAGGATTC1255920.36663853256774953No Hit
CGAGGATCCATTGGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCA1017340.29699028976564934No Hit
CTCGCCTGTATTTAGCCTTGGACGGAGTTTACCGCCCGATTTGGGCTGCA985470.28768653631564123No Hit
CTCCGATCCCGAAGGCCAACACAATAGGACCGGAATCCTATGATGTTATC941870.27495846444804306No Hit
CCGAAGGCCAACACAATAGGACCGGAATCCTATGATGTTATCCCATGCTA904850.26415128049073844No Hit
CTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTA856810.25012704717607287No Hit
CGCGAGCTGATGACTCGCGCTTACTAGGCATTCCTCGTTGAAGACCAACA848610.24773323549455215No Hit
GGTAATTCCAGCTCCAATAGCGTATATTTAAGTTGTTGCAGTTAAAAAGC847720.247473419348631No Hit
CTTGGACGGAGTTTACCGCCCGATTTGGGCTGCATTCCCAAACAACCCGA826000.24113273767513943No Hit
CCGGAATCCTATGATGTTATCCCATGCTAATGTATCCAGAGCGATGGCTT811280.2368355537785558No Hit
CTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACGGCGCCGGAGGCACGA783840.2288250424930766No Hit
CTTAAATATACGCTATTGGAGCTGGAATTACCGCGGCTGCTGGCACCAGA765890.22358493033657695No Hit
CAAAGATTAAGCCATGCATGTGCAAGTATGAACTAATTCGAACTGTGAAA756290.22078241909967458No Hit
CCGGAACCCAAAGACTTTGATTTCTCATAAGGTGCCAGCGGGGTCCTATT742690.21681219484739625No Hit
CTTTGATTTCTCATAAGGTGCCAGCGGGGTCCTATTAGTAACACCCGCTG717290.2093972171997588No Hit
CAGAAACCTGAGATGCGCAAGGAAGCTGACGAGCGGGAGGCCCTCACGGG709840.20722235170862105No Hit
CGGGTTCAGAAACCTGAGATGCGCAAGGAAGCTGACGAGCGGGAGGCCCT651100.1900744860778248No Hit
CGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTA642980.18770402865661157No Hit
GTTTACCGCCCGATTTGGGCTGCATTCCCAAACAACCCGACTCGTTGACG640370.18694209591407876No Hit
CTCGCGCTTACTAGGCATTCCTCGTTGAAGACCAACAATTGCAATGATCT632370.1846066698833268No Hit
CTCAAAGCAAGCCATCGCTCTGGATACATTAGCATGGGATAACATCATAG616120.17986283575836187No Hit
GCCCTATCAACTTTCGATGGTAGGATAGGGGCCTACCATGGTGGTGACGG615920.17980445010759308No Hit
GTTGGACCTTGGGCCGGGCCGGCCGGTCCGCCTCACGGCGAGAACCGACC566630.1654153064756226No Hit
GTCAAATTAAGCCGCAGGCTCCACGCCTGGTGGTGCCCTTCCGTCAATTC564510.16479641857747332No Hit
CCGAATTGTAGTCTGGAGAGGCGTCCTCAGCGACGGACCGGGCCCAAGTT561580.16394106879371043No Hit
CCGATCCCGAAGGCCAACACAATAGGACCGGAATCCTATGATGTTATCCC558010.16289888492748736No Hit
CGAAGGCCAACACAATAGGACCGGAATCCTATGATGTTATCCCATGCTAA555780.16224788492141526No Hit
CGGCGAGCGAACCGGGAGCAGCCCAGCTTGAGAATCGGGCGGCCTCGCCG552450.16127576383611475No Hit
GCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTT547060.1597022705478956No Hit
GTACAATCTAAATCCCTTAACGAGGATCCATTGGAGGGCAAGTCTGGTGC544160.15885567861174804No Hit
CTGAGATGCGCAAGGAAGCTGACGAGCGGGAGGCCCTCACGGGCCGCACC538840.157302620301298No Hit
GTTGAGACTAGGACGGTATCTGATCGTCTTCGAGCCCCCAACTTTCGTTC537720.15697566065699273No Hit
GAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCC529060.1544475619787037No Hit
CAAGGATTGACAGACTGAGAGCTCTTTCTTGATTCTATGGGTGGTGGTGC525230.1533294767664812No Hit
CGATCCCGAAGGCCAACACAATAGGACCGGAATCCTATGATGTTATCCCA523300.1527660552365623No Hit
CGAGCCTCCACCAGAGTTTCCTCTGGCTTCGCCCCGCTCAGGCATAGTTC520350.1519048668877225No Hit
GTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCATCGCTCTGGATAC517570.15109330634203622No Hit
CGAGCCCCCAACTTTCGTTCTTGATTAATGAAAACATCCTTGGCAAATGC508760.14852141842567063No Hit
CTGAGAGCTCTTTCTTGATTCTATGGGTGGTGGTGCATGGCCGTTCTTAG507740.14822365160674977No Hit
AGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC502010.14655090271222365No Hit
CTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATCCAACGAGTA498490.1455233152586928No Hit
GCCAGTTCTGCTTACCAAAAATGGCCCACTTGGAGCTCCCGATTCCGTGG496150.14484020314469787No Hit
GGAGAATTAGGGTTCGATTCCGGAGAGGGAGCCTGAGAAACGGCTACCAC495790.14473510897331401No Hit
GCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTCACC495680.1447029968653912No Hit
GCCGTTTAGGCCACGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTT489490.14289596097409685No Hit
ATTTCTCATAAGGTGCCAGCGGGGTCCTATTAGTAACACCCGCTGATCCC488810.14269744976148294No Hit
GCGAGCTGATGACTCGCGCTTACTAGGCATTCCTCGTTGAAGACCAACAA485080.14160855737464484No Hit
CTGGACCCTACCTCCGGCTGAACCGATTCCAGGGTTGGCGGGCCGTTAAG484830.14153557531118383No Hit
GGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCC473290.13816672326182414No Hit
CAAACCCCGACTTCCGGGAGGGGCGCATTTATTAGATAAAAGGCTGACGC472160.13783684433498045No Hit
CTTTCTTGATTCTATGGGTGGTGGTGCATGGCCGTTCTTAGTTGGTGGAG466710.13624583535153068No Hit
GGCCAACACAATAGGACCGGAATCCTATGATGTTATCCCATGCTAATGTA464880.13571160664699614No Hit
CGAGGATTCCCCTAGTAACGGCGAGCGAACCGGGAGCAGCCCAGCTTGAG455060.13284487119424812No Hit
GTTTGATGGTACGTGCTACTCGGATAACCGTAGTAATTCTAGAGCTAATA454330.13263176356894202No Hit
GTTTAATTAAAACAAAGCATTGCGACGGTCCTCGAGGATGCTGACGCAAT453560.13240697881348212No Hit
GTCCTATTGTGTTGGCCTTCGGGATCGGAGTAATGATTAATAGGGACAGT452320.1320449877787156No Hit
GAGCACTCTAATTTCTTCAAAGTAACGGCGCCGGAGGCACGACCCGGCCA447650.13068168283326415No Hit
GTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCAC446330.13029633753819006No Hit
GGAACCCAAAGACTTTGATTTCTCATAAGGTGCCAGCGGGGTCCTATTAG439660.12834917608505061No Hit
GTTCGATTAGTCTTTCGCCCCTATACCCAAGTCAGACGAACGATTTGCAC439180.1282090505232055No Hit
CGGGATCGGAGTAATGATTAATAGGGACAGTCGGGGGCATTCGTATTTCA438510.12801345859313001No Hit
GCTCTTTCTTGATTCTATGGGTGGTGGTGCATGGCCGTTCTTAGTTGGTG430970.1258123195591463No Hit
CTTTGAGCACTCTAATTTCTTCAAAGTAACGGCGCCGGAGGCACGACCCG426320.12445485317877172No Hit
AAATTTCTGCCCTATCAACTTTCGATGGTAGGATAGGGGCCTACCATGGT420510.12275875002393812No Hit
GTTTAGGCCACGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGA418180.12207855719248162No Hit
GTTTTACCCTACTGATGACCGCGCCGCGATAGTAATTCAACCTAGTACGA408310.11919722532704138No Hit
CCGACTTCCGGGAGGGGCGCATTTATTAGATAAAAGGCTGACGCGGGCTC403020.11765292486420666No Hit
GCGATTTGTCTGGTTAATTCCGTTAACGAACGAGACCTCAGCCTGCTAAC402160.11740186656590082No Hit
GTTAGTTTTACCCTACTGATGACCGCGCCGCGATAGTAATTCAACCTAGT400890.11703111768351895No Hit
CTCCAATAGCGTATATTTAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGA399220.11654359749959947No Hit
GTGATTTCTGCCCAGTGCTCTGAATGTCAAAGTGAAGAAATTCAACCAAG396280.11568532843329812No Hit
CGCAAATTACCCAATCCTGACACGGGGAGGTAGTGACAATAAATAACAAT396120.11563861991268308No Hit
CTTCGAGCCCCCAACTTTCGTTCTTGATTAATGAAAACATCCTTGGCAAA394170.1150693598176873No Hit
CGCAGTTTGGCACCGTAACCCGGCTTCCGGTTCATCCCGCATCGCCAGTT392960.11471612663053607No Hit
CGAGAACCGACCGGCTCGACCCTTCTGCCGGCGATGCGCTCCTGGCCTTA391640.11433078133546198No Hit
CGGGCCTGTCGGCCAAGGCTATATACTCGTTGGATACATCAGTGTAGCGC386160.1127310145043969No Hit
CGAAAATGGATGGCGCTGAAGCGCGCGACCCACACCCGGCCATCTGGGCG383640.11199535530471004No Hit
GGCGAGCGAACCGGGAGCAGCCCAGCTTGAGAATCGGGCGGCCTCGCCGC377630.11024086649910764No Hit
TTTGATTTCTCATAAGGTGCCAGCGGGGTCCTATTAGTAACACCCGCTGA376460.10989931044211017No Hit
CGGAATCCTATGATGTTATCCCATGCTAATGTATCCAGAGCGATGGCTTG375870.10972707277234221No Hit
CGGAGTTTACCGCCCGATTTGGGCTGCATTCCCAAACAACCCGACTCGTT372980.10888340011873306No Hit
GTCCGCCTCACGGCGAGAACCGACCGGCTCGACCCTTCTGCCGGCGATGC365960.10683406377674821No Hit
CTTGACTCTAGTCCGACTTTGTGAAATGACTTGAGAGGTGTAGGATAAGT365250.106626794716519No Hit
CGACGGGTTCAGAAACCTGAGATGCGCAAGGAAGCTGACGAGCGGGAGGC365110.10658592476098083No Hit
ATTTCTTCAAAGTAACGGCGCCGGAGGCACGACCCGGCCAGTTAAGGCCA363250.10604293820883098No Hit
GTGAAATTCTTGGATTTATGAAAGACGAACAACTGCGAAAGCATTTGCCA361770.10561088439314187No Hit
GGCCGGTCCGCCTCACGGCGAGAACCGACCGGCTCGACCCTTCTGCCGGC356280.10400819827953835No Hit
CTTGGATTTATGAAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTT354860.10359366015907988No Hit
TGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGC349570.10204935969624514No Hit
GTTTCAGCCTTGCGACCATACTCCCCCCGGAACCCAAAGACTTTGATTTC349180.10193550767724599No Hit
CTGTATTTAGCCTTGGACGGAGTTTACCGCCCGATTTGGGCTGCATTCCC349110.10191507269947692No Hit
TGAGAATCGGGCGGCCTCGCCGCCCGAATTGTAGTCTGGAGAGGCGTCCT347370.10140711753778835No Hit
GGAGTTTACCGCCCGATTTGGGCTGCATTCCCAAACAACCCGACTCGTTG347220.10136332829971176No Hit
TGATGACTCGCGCTTACTAGGCATTCCTCGTTGAAGACCAACAATTGCAA342680.10003797402726002No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)