FastQCFastQC Report
Fri 1 Sept 2023
SRR11943809_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR11943809_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3217119
Total Bases508.3 Mbp
Sequences flagged as poor quality0
Sequence length158
%GC34

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCGGCTGCCGGGATCATGCGCGACACTAGTTAGCGTGCGGCTGTCTCTT107770.3349891626638617No Hit
CCCCTGTCGGGATCATGCGCGACACTAGTTAGCGTGCGGCTGTCTCTTAT49620.15423737822567335No Hit
CCCGGAGCCTCCGGGATCATGCGCGACACTAGTTAGCGTGCGGCTGTCTC44350.13785626207796478No Hit
CCCGGAGCAGATTACGCTCCGGGATCATGCGCGACACTAGTTAGCGTGCG34960.10866865664589964No Hit
CCCGGAGCCCAGATTACGCTCCGGGATCATGCGCGACACTAGTTAGCGTG33410.1038506813083383No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)