FastQCFastQC Report
Fri 1 Sept 2023
SRR11943811_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR11943811_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2106253
Total Bases332.7 Mbp
Sequences flagged as poor quality0
Sequence length158
%GC33

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCGGCTGCCGGGATCGTCTCCGACACTAGTTAGCGTGCGGCTGTCTCTT108300.5141832438933024No Hit
CCCCTGTCGGGATCGTCTCCGACACTAGTTAGCGTGCGGCTGTCTCTTAT37590.17846858853138725No Hit
CCCGGAGCAGATTACGCTCCGGGATCGTCTCCGACACTAGTTAGCGTGCG35700.1694953075437756No Hit
CCCGGAGCCTCCGGGATCGTCTCCGACACTAGTTAGCGTGCGGCTGTCTC33480.15895526320912065No Hit
GTCTCTTACGTCTCCGACACTAGTTAGCGTGCGGCTGTCTCTTATACACA33250.15786327663390864No Hit
CCCGGAGCCCAGATTACGCTCCGGGATCGTCTCCGACACTAGTTAGCGTG31360.14888999564629699No Hit
CCCGGAGCGTACCAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCG21520.10217196129809666No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)