FastQCFastQC Report
Fri 1 Sept 2023
SRR11943815_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR11943815_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4557788
Total Bases720.1 Mbp
Sequences flagged as poor quality0
Sequence length158
%GC35

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCGGCTGCCGGGATCGTCTCCGACACTAGTTAGCGTGCGGCTGTCTCTT257540.5650548029000032No Hit
CCCGGAGCGTACCAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCG134590.2952967536006501No Hit
CCCGGAGCAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGCGA110150.24167425075497148No Hit
CCCGGAGCCCAGATTACGCTCCGGGATCGTCTCCGACACTAGTTAGCGTG99820.219009747710951No Hit
GTCTCTTACGTCTCCGACACTAGTTAGCGTGCGGCTGTCTCTTATACACA88590.1943706025817787No Hit
CCCGGAGCCTCCGGGATCGTCTCCGACACTAGTTAGCGTGCGGCTGTCTC78120.17139893299117906No Hit
CCCCTGTCGGGATCGTCTCCGACACTAGTTAGCGTGCGGCTGTCTCTTAT78100.17135505205595347No Hit
CCCGGAGCACGTACCAGATTACGCTCCGGGCGACGTACCAGATTACGCTC76030.16681337526010426No Hit
CCCGGAGCGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGCGAC70290.1542195468503581No Hit
CCCGGAGCAGATTACGCTCCGGGATCGTCTCCGACACTAGTTAGCGTGCG66290.14544335980523887No Hit
CCCTGTCTGGATCGTCTCCGACACTAGTTAGCGTGCGGCTGTCTCTTATA62400.13690851790386038No Hit
CCCGGAGCATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGCGACG59780.13116011538930727No Hit
CTGTCTCTATCGTCTCCGACACTAGTTAGCGTGCGGCTGTCTCTTATACA58560.1284833783405459No Hit
CCTGTCTCGATCGTCTCCGACACTAGTTAGCGTGCGGCTGTCTCTTATAC56210.12332736845153834No Hit
CCCCGGCTCCGGGGATCGTCTCCGACACTAGTTAGCGTGCGGCTGTCTCT55090.12087003607890495No Hit
CCGGCTGTCCGGATCGTCTCCGACACTAGTTAGCGTGCGGCTGTCTCTTA46940.10298855497447447No Hit
TCCCGGCTCCGGGAATCGTCTCCGACACTAGTTAGCGTGCGGCTGTCTCT46530.10208899580234974No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)