FastQCFastQC Report
Fri 1 Sept 2023
SRR11943820_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR11943820_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5944311
Total Bases939.2 Mbp
Sequences flagged as poor quality0
Sequence length158
%GC33

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCGGCTGCCGGGACGATCAGCGACACTAGTTAGCGTGCGGCTGTCTCTT167760.2822194195424836No Hit
CCCCTGTCGGGACGATCAGCGACACTAGTTAGCGTGCGGCTGTCTCTTAT122730.20646631712237126No Hit
CCCGGAGCGTACCAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCG119290.20067927132345534No Hit
CCCGGAGCCCAGATTACGCTCCGGGACGATCAGCGACACTAGTTAGCGTG97200.16351768943448616No Hit
CCCGGAGCAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGCGA96940.1630802964380565No Hit
CCCGGAGCACGTACCAGATTACGCTCCGGGCGACGTACCAGATTACGCTC69030.11612784055208417No Hit
CCCGGAGCGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGCGAC63890.1074809174688202No Hit
CCCGGAGCAGATTACGCTCCGGGACGATCAGCGACACTAGTTAGCGTGCG62370.10492385072046198No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)