FastQCFastQC Report
Fri 1 Sept 2023
SRR11943824_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR11943824_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6114059
Total Bases966 Mbp
Sequences flagged as poor quality0
Sequence length158
%GC29

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCGGAGCAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGCGA140840.23035433580212422No Hit
CCCGGAGCGTACCAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCG134650.22023012862649838No Hit
CCCGGCTGCCGGGCGATCGATCGACACTAGTTAGCGTGCGGCTGTCTCTT107670.17610232416795454No Hit
GCTGTCTCCCGATCGATCGACACTAGTTAGCGTGCGGCTGTCTCTTATAC87580.14324362915045472No Hit
CCCGGAGCACGTACCAGATTACGCTCCGGGCGACGTACCAGATTACGCTC80220.1312057996169157No Hit
CCCGGAGCGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGCGAC79400.12986462839171162No Hit
GAGCGTAAGTACCAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCG71110.1163057144198314No Hit
CCCGGAGCATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGCGACG63580.10398983719326227No Hit
GAGCGTAAAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGCGA61780.10104580279647285No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)