FastQCFastQC Report
Fri 1 Sept 2023
SRR11943825_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR11943825_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4747390
Total Bases750 Mbp
Sequences flagged as poor quality0
Sequence length158
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCGGCTGCCGGGATTAGCCGCGACACTAGTTAGCGTGCGGCTGTCTCTT171540.3613353863912592No Hit
CCCCTGTCGGGATTAGCCGCGACACTAGTTAGCGTGCGGCTGTCTCTTAT158070.3329619011709592No Hit
CCTGTCTCGATTAGCCGCGACACTAGTTAGCGTGCGGCTGTCTCTTATAC141820.29873256673667004No Hit
CCCGGAGCGTACCAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCG135920.2863046853112974No Hit
CCCTGTCTGGATTAGCCGCGACACTAGTTAGCGTGCGGCTGTCTCTTATA117980.24851550009584214No Hit
CCCGGAGCAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGCGA107580.22660872605789706No Hit
CCCGGAGCCCAGATTACGCTCCGGGATTAGCCGCGACACTAGTTAGCGTG104660.2204579779626279No Hit
CCCGGAGCACGTACCAGATTACGCTCCGGGCGACGTACCAGATTACGCTC76060.16021434935827897No Hit
CCCGGAGCGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGCGAC72990.15374763817592405No Hit
CCCGGAGCAGATTACGCTCCGGGATTAGCCGCGACACTAGTTAGCGTGCG62280.13118787375800178No Hit
CCCGGAGCCTCCGGGATTAGCCGCGACACTAGTTAGCGTGCGGCTGTCTC61810.1301978560851331No Hit
CCCGGAGCATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGCGACG59110.12451052051758967No Hit
CCCCGGCTCCGGGGATTAGCCGCGACACTAGTTAGCGTGCGGCTGTCTCT53040.11172454759351981No Hit
TCCCGGCTCCGGGAATTAGCCGCGACACTAGTTAGCGTGCGGCTGTCTCT48790.10277226012609032No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)