FastQCFastQC Report
Fri 1 Sept 2023
SRR11943826_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR11943826_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5568885
Total Bases879.8 Mbp
Sequences flagged as poor quality0
Sequence length158
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCGGCTGCCGGGTGTTCCGTCGACACTAGTTAGCGTGCGGCTGTCTCTT144810.26003410018342993No Hit
CCCCCTGTGGGGTGTTCCGTCGACACTAGTTAGCGTGCGGCTGTCTCTTA63210.1135056658559119No Hit
TCCCCTGTGGGATGTTCCGTCGACACTAGTTAGCGTGCGGCTGTCTCTTA61090.1096987996699519No Hit
CCTGTCTCGTGTTCCGTCGACACTAGTTAGCGTGCGGCTGTCTCTTATAC60690.1089805230310915No Hit
CCCCTGTCGGGTGTTCCGTCGACACTAGTTAGCGTGCGGCTGTCTCTTAT59800.10738235750962716No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)