FastQCFastQC Report
Fri 1 Sept 2023
SRR11943827_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR11943827_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3216681
Total Bases508.2 Mbp
Sequences flagged as poor quality0
Sequence length158
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCGGCTGCCGGGATCATGCGCGACACTAGTTAGCGTGCGGCTGTCTCTT219430.6821627634198106No Hit
CTGTCTCTATCATGCGCGACACTAGTTAGCGTGCGGCTGTCTCTTATACA129300.4019671207682702No Hit
CCTGTCTCGATCATGCGCGACACTAGTTAGCGTGCGGCTGTCTCTTATAC119010.36997762600643336No Hit
CCCGGAGCGTACCAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCG112460.34961502244083265No Hit
CCCGGAGCAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGCGA93490.29064119196152804No Hit
CCCCTGTCGGGATCATGCGCGACACTAGTTAGCGTGCGGCTGTCTCTTAT84570.26291074557906113No Hit
CCCGGAGCCCAGATTACGCTCCGGGATCATGCGCGACACTAGTTAGCGTG75640.23514921125221933No Hit
CCCGGAGCCTCCGGGATCATGCGCGACACTAGTTAGCGTGCGGCTGTCTC73020.227004169825979No Hit
CCCTGTCTGGATCATGCGCGACACTAGTTAGCGTGCGGCTGTCTCTTATA69360.21562598218474258No Hit
CCCGGAGCACGTACCAGATTACGCTCCGGGCGACGTACCAGATTACGCTC62940.19566752189601644No Hit
CCCGGAGCGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGCGAC60890.18929449329914902No Hit
CCCGGAGCATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGCGACG49760.15469361120981534No Hit
TCCCGGCTCCGGGAATCATGCGCGACACTAGTTAGCGTGCGGCTGTCTCT49470.1537920608229414No Hit
CCCGGAGCAGATTACGCTCCGGGATCATGCGCGACACTAGTTAGCGTGCG46290.14390609451170322No Hit
CCCCGGCTCCGGGGATCATGCGCGACACTAGTTAGCGTGCGGCTGTCTCT46220.14368847890107847No Hit
CCCGGAGCCCAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGC34510.10728449603799692No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)