FastQCFastQC Report
Thu 31 Aug 2023
SRR11943849_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR11943849_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1187098
Total Bases187.5 Mbp
Sequences flagged as poor quality0
Sequence length158
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGTCTCTCCTTGGAACGACACTAGTTAGCGTGCGGCTGTCTCTTATACA79130.6665835508104638No Hit
CCCGGAGCGTACCAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCG22120.1863367641087762No Hit
CCCGGAGCAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGCGA21050.17732318645975312No Hit
CCCCTGTCGGGCCTTGGAACGACACTAGTTAGCGTGCGGCTGTCTCTTAT20120.16948895541901343No Hit
CCCGGAGCCTCCGGGCCTTGGAACGACACTAGTTAGCGTGCGGCTGTCTC19780.16662482794175373No Hit
CCCGGAGCAGATTACGCTCCGGGCCTTGGAACGACACTAGTTAGCGTGCG19000.16005418255274628No Hit
CCCGGAGCCCAGATTACGCTCCGGGCCTTGGAACGACACTAGTTAGCGTG16260.1369726846477713No Hit
CCTGTCTCGCCTTGGAACGACACTAGTTAGCGTGCGGCTGTCTCTTATAC16220.13663572847397604No Hit
CCCGGCTGCCGGGCCTTGGAACGACACTAGTTAGCGTGCGGCTGTCTCTT15160.12770638986840177No Hit
CCCGGAGCGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGCGAC13760.11591292378556783No Hit
AGCGTAATAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGCGA13000.10951075648345798No Hit
CCCGGAGCACGTACCAGATTACGCTCCGGGCGACGTACCAGATTACGCTC12850.10824717083172578No Hit
AGCGTAATAGATTACGCTCCTTGGAACGACACTAGTTAGCGTGCGGCTGT12800.10782597561448169No Hit
AGCGTAATGTACCAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCG12590.10605695570205662No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)