FastQCFastQC Report
Thu 31 Aug 2023
SRR11943904_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR11943904_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6150707
Total Bases971.8 Mbp
Sequences flagged as poor quality0
Sequence length158
%GC28

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGGCTGTCCGGGATCTTGCCGACACTAGTTAGCGTGCGGCTGTCTCTTA129290.21020347742137613No Hit
TGTCTCTTATCTTGCCGACACTAGTTAGCGTGCGGCTGTCTCTTATACAC89800.14599947615778153No Hit
CCTGTCTCGGATCTTGCCGACACTAGTTAGCGTGCGGCTGTCTCTTATAC82140.13354562329176142No Hit
CCGGAGCTCTCCGGGATCTTGCCGACACTAGTTAGCGTGCGGCTGTCTCT80940.13159462806470867No Hit
CTGTCTCTGATCTTGCCGACACTAGTTAGCGTGCGGCTGTCTCTTATACA80450.13079797168032878No Hit
CCCTGTCTGGGATCTTGCCGACACTAGTTAGCGTGCGGCTGTCTCTTATA69630.1132064980497364No Hit
CCGGAGCGGTACCAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCG66440.10802010240448781No Hit
CCGGAGCGCCAGATTACGCTCCGGGATCTTGCCGACACTAGTTAGCGTGC62240.10119161910980316No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)