FastQCFastQC Report
Thu 31 Aug 2023
SRR11943937_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR11943937_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7526233
Total Bases212.4 Mbp
Sequences flagged as poor quality0
Sequence length20-50
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCGTTGTAGTCTAGCTGGTCAGGATATT3385604.4983991327401105No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATACT829371.101972261555017No Hit
TCCGTTGTAGTCTAGCTGGTTAGGATATT740340.9836793519414029No Hit
TCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTG728540.9680008577996456No Hit
CTCGACTGCATAATTTGTGGTAGTGGGGGACTG498710.662628967240318No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCCT482540.6411441155223337No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGC372570.49502852223682153No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATATTC369020.4903116871348522No Hit
GGCTGGTCCGATGGTAGTGGGTTATCAGAACT340930.45298889896180466No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATA317280.42156547638107933No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCGGCGCT280910.37324116858991746No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATATC270780.3597815799750021No Hit
GCGTCTGTAGTCCAACGGTTAGGATAATTGCC237280.31527060084374214No Hit
TCCCTGTGGTCTAGTGGTTAGGATTCGGCGCT229440.3048537030410831No Hit
ACCTCCTGGGAAGTCCTCGTGTTGCATTCC201260.2674113331330561No Hit
AGGACTCGAGGAAGAAGCCCCGGCTAACTCCGTG198090.26319939868988906No Hit
GGTGGCTGTAGTTTAGTGGTGAGAATTCC194930.2590007511061643No Hit
GCGTCTGTAGTCCAACGGTTAGGATAATT178290.23689141699439814No Hit
TCCGTTGTAGTCTAGCTGGTCAGGAT165440.21981780261121336No Hit
TGACAGGACTCGAGGAAGAAGCCCCGGC159660.21213799785364074No Hit
GCATGGGTGGTTCAGTGGTAGAATTCTCGC142250.18900557556482772No Hit
GGCTGGTCCGATGGTAGTGGGTTATCAGAACTT139810.18576358186093894No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATAT132240.1757054292632184No Hit
ACCGCCTGGGAATACCGGGTGCTGTAGGCT131020.174084432411274No Hit
GCATGGGTGGTTCAGTGGTAGAATTCTC128860.1712144707717659No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCCTG121130.1609437284229707No Hit
TGAAGTGGCAGGAATGGCGTGAGGCTGGCT119570.15887097834999261No Hit
GCGTCTGTAGTCCAACGGTTAGGATA118570.1575422924057759No Hit
AGGAGTGTAGCTCAACTGGTAGAGCACCGGTCT118430.15735627637358557No Hit
GCATTGTGGTTCAGTGGTAGAATTCTCGCC115500.1534632265570306No Hit
ACTCGACTGCATAATTTGTGGTAGTGGGGGACTG112040.14886597319004075No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCGG108240.14381696660201723No Hit
TCATGCATTGGATGGATGCCCGGGCATTGAGA106910.14204981429620903No Hit
GGCTGGTCCGAAGGTAGTGAGTTATCTCAATT105730.1404819648820333No Hit
GCGTCTGTAGTCCAACGGTTAGGATAAT103120.13701409456762767No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTC98340.13066297575427174No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGT94930.12613215668449276No Hit
GCATGGGTGGTTCAGTGGTAGAATTCTCGCCT93980.12486990503748688No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCCC91900.1221062382735161No Hit
GTCGTTGTAGTATAGTGGTGAGTATTCCCGCC90190.11983418530890552No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATACC89200.11851878622413099No Hit
TCAAACTTGAGAGTTTGATCCTGGCTCAGAACG82830.1100550567594705No Hit
TCCGTTGTAGTCTAGTTGGTCAGGATATT82020.10897882114465497No Hit
GGGATTGTAGTTCAATTGGTCAGAGCACCGCCC79740.10594941719184085No Hit
TCCGTTGTAGTCTAGCTGGTCAGGATATTTGGCT77600.10310602927121708No Hit
GCCGCCATGGTGAAATTGGTAGACACGCTGCTC76750.10197664621863288No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)