FastQCFastQC Report
Fri 1 Sept 2023
SRR11943948_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR11943948_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7088988
Total Bases1.1 Gbp
Sequences flagged as poor quality0
Sequence length4-183
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGGAGCGGTACCAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCG110870.1563974998970234No Hit
CCGGAGCGAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGCGA106250.14988034963523708No Hit
CCCGGCTGCCGGGGATCTTGCCGACACTAGTTAGCGTGCGGCTGTCTCTT99180.13990713484068532No Hit
CCGGCTGTCCGGGATCTTGCCGACACTAGTTAGCGTGCGGCTGTCTCTTA90040.12701389817559292No Hit
CTGTCTCTGATCTTGCCGACACTAGTTAGCGTGCGGCTGTCTCTTATACA77540.109380915865565No Hit
CCTGTCTCGGATCTTGCCGACACTAGTTAGCGTGCGGCTGTCTCTTATAC75370.10631983013654417No Hit
CCGGAGCGGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGCGAC73070.10307536139149903No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)