FastQCFastQC Report
Fri 1 Sept 2023
SRR11943949_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR11943949_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences49474481
Total Bases4.9 Gbp
Sequences flagged as poor quality0
Sequence length100
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCGGGACTACCCGCTGAGTTTAAGCATATAAATAAGCGGAGGAGAAGAA2238660.45248781892224393No Hit
CTTGTCCGTACCAGTTCTGAGTCGGTTGTTCGACGCCCGGGGAAGGCCCC2197960.4442613556673793No Hit
CTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACGGCGCCGGAGGCACGA1980910.4003902537148394No Hit
CCGGAACCCAAAGACTTTGATTTCTCATAAGGTGCCAGCGGGGTCCTATT1556210.3145480192101459No Hit
CGCTGATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTG1538430.3109542473017554No Hit
CCCGACTGTCCCTATTAATCATTACTCCGATCCCGAAGGCCAACACAATA1482480.2996453868813702No Hit
GTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGAG1457550.29460642548226024No Hit
GTCGGGGCGGGCGGCGAGCAGAGGCGCCGGTTGCTAGCTTGGATTCTGAC1407850.2845608425887277No Hit
GTCTGACATGCGTGCGAGTCGACGGGTTCAGAAACCTGAGATGCGCAAGG1286390.26001081244288343No Hit
CTGTATTTAGCCTTGGACGGAGTTTACCGCCCGATTTGGGCTGCATTCCC1236780.24998342074573757No Hit
CCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCA1113410.22504733298768712No Hit
GTCAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGC1076860.21765968601065266No Hit
CTCGGGGGTCCCGGCCCCGAACCCGTCGGCTGCTGGCGGAATGCTCGAGC1058370.21392240577521168No Hit
ATCACGATGAAATTTCCCAAGATTACCCGGGCCTGTCGGCCAAGGCTATA1055580.21335847868722463No Hit
CGGGCGGCGAGCAGAGGCGCCGGTTGCTAGCTTGGATTCTGACTTAGAGG1047670.2117596746492399No Hit
CTCGCCTGTATTTAGCCTTGGACGGAGTTTACCGCCCGATTTGGGCTGCA973180.19670342777319888No Hit
CTTGGATTTATGAAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTT971570.19637800748228162No Hit
CGGGACTACCCGCTGAGTTTAAGCATATAAATAAGCGGAGGAGAAGAAAC954760.19298029624605864No Hit
CAAATTTCTGCCCTATCAACTTTCGATGGTAGGATAGGGGCCTACCATGG893730.18064464385184759No Hit
GCGGTGTGTACAAAGGGCAGGGACGTAGTCAACGCGAGCTGATGACTCGC890270.17994529341298193No Hit
GTCCGTACCAGTTCTGAGTCGGTTGTTCGACGCCCGGGGAAGGCCCCCGA872100.17627269298691584No Hit
CCCGATTCCGTGGCACGGCTCACCGAAGCAGCCGCGCCGTCCTACCTATT871960.17624439557031432No Hit
GTTAAAAAGCTCGTAGTTGGACCTTGGGCCGGGCCGGCCGGTCCGCCTCA832890.16834739509445285No Hit
CCCAACTTTCGTTCTTGATTAATGAAAACATCCTTGGCAAATGCTTTCGC809280.16357523790901415No Hit
AGAAATTTGAATGATGCGTCGCCGGCACGAAGGCCGTGCGATCCGTCAAG808270.16337109226067476No Hit
GCATCATTCAAATTTCTGCCCTATCAACTTTCGATGGTAGGATAGGGGCC798020.16129931711663634No Hit
GTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGTTAATCCAT786260.15892233412211035No Hit
GTTGATTCACACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGTGGCGCG761000.15381667166958254No Hit
CGACGCATCATTCAAATTTCTGCCCTATCAACTTTCGATGGTAGGATAGG743860.15035225937994176No Hit
CAAAGGGCAGGGACGTAGTCAACGCGAGCTGATGACTCGCGCTTACTAGG739470.14946493324508042No Hit
CCCGTGTCAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTG705090.1425158962253692No Hit
GTTAGTTTTACCCTACTGATGACCGCGCCGCGATAGTAATTCAACCTAGT704660.1424289827315217No Hit
CGCCTGTATTTAGCCTTGGACGGAGTTTACCGCCCGATTTGGGCTGCATT679810.13740619128475548No Hit
GTCAAAGTGAAGAAATTCAACCAAGCGCGGGTAAACGGCGGGAGTAACTA673330.1360964251449146No Hit
GCCCGGTCCGTCGCTGAGGACGCCTCTCCAGACTACAATTCGGGCGGCGA670880.13560122035438835No Hit
CTGACATGCGTGCGAGTCGACGGGTTCAGAAACCTGAGATGCGCAAGGAA669130.1352475026468696No Hit
GTCAGTCGGGACTACCCGCTGAGTTTAAGCATATAAATAAGCGGAGGAGA664800.13437230397626607No Hit
GAAGAAACTTACGAGGATTCCCCTAGTAACGGCGAGCGAACCGGGAGCAG653950.13217925418964982No Hit
CATCATTCAAATTTCTGCCCTATCAACTTTCGATGGTAGGATAGGGGCCT650510.1314839462388701No Hit
GTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTATG647350.13084523312129337No Hit
CACGCTTTCACGGTTCGTATTCGTACTGGAAATCAGAATCAAACGAGCTT631810.12770421987852687No Hit
GCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTGCAAGTA630750.12748996800997267No Hit
AAGAAACTTACGAGGATTCCCCTAGTAACGGCGAGCGAACCGGGAGCAGC627530.12683912742813816No Hit
CGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT627090.1267501926902477No Hit
CGTTGATTCACACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGTGGCGC626430.12661679058341208No Hit
GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTGATGACTCGCGCTTACT617100.12473096989132638No Hit
CGAGTATATAGCCTTGGCCGACAGGCCCGGGTAATCTTGGGAAATTTCAT604710.12222664852209364No Hit
CTTTTGTTCCACACGAGATTTCTGTTCTCGTTGAGCTCATCTTAGGACAC583860.1180123546925131No Hit
CTCCCCCCGGAACCCAAAGACTTTGATTTCTCATAAGGTGCCAGCGGGGT578610.11695120156995685No Hit
GTGAAATTCTTGGATTTATGAAAGACGAACAACTGCGAAAGCATTTGCCA573810.11598100442933398No Hit
CAGAAATTTGAATGATGCGTCGCCGGCACGAAGGCCGTGCGATCCGTCAA563720.11394156918998301No Hit
CGCCGCCCGAATTGTAGTCTGGAGAGGCGTCCTCAGCGACGGACCGGGCC560080.11320583635834401No Hit
CGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCAAGAACG559110.11300977568617647No Hit
CTTCCGTCAATTCCTTTAAGTTTCAGCCTTGCGACCATACTCCCCCCGGA545960.11035183976967843No Hit
GTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCATCGCTCTGGATAC542840.10972121162827358No Hit
GGAGTCTGACATGCGTGCGAGTCGACGGGTTCAGAAACCTGAGATGCGCA536490.10843772166099126No Hit
TTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTATGAAAGACGAAC533920.10791826194194944No Hit
CCCGCTGATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATC528410.10680455647427611No Hit
CTCGAAGCGATACTGACGTGCAAATCGTTCGTCTGACTTGGGTATAGGGG527570.1066347719746671No Hit
CCCAGCTTGAGAATCGGGCGGCCTCGCCGCCCGAATTGTAGTCTGGAGAG525140.10614360967222677No Hit
CCGGTCCGTCGCTGAGGACGCCTCTCCAGACTACAATTCGGGCGGCGAGG522770.10566457483404425No Hit
GGCGGGAGTAACTATGACTCTCTTAAGGTAGCCAAATGCCTCGTCATCTA520790.10526436851353732No Hit
CTGGCTTGTGGCAGCCAAGCGTTCATAGCGACGTTGCTTTTTGATCCTTC517750.10464991032447617No Hit
ATCGCTTCGAGCCTCCACCAGAGTTTCCTCTGGCTTCGCCCCGCTCAGGC498320.10072263314899654No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)