FastQCFastQC Report
Thu 31 Aug 2023
SRR11943960_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR11943960_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7373364
Total Bases1.1 Gbp
Sequences flagged as poor quality0
Sequence length158
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCGGCTGCCGGGGATCTTGCCGACACTAGTTAGCGTGCGGCTGTCTCTT138610.18798746406660513No Hit
CCGGAGCGGTACCAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCG137530.18652273236476594No Hit
CCGGAGCGAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGCGA135730.18408151286170057No Hit
CCGGCTGTCCGGGATCTTGCCGACACTAGTTAGCGTGCGGCTGTCTCTTA126120.17104811318144608No Hit
CTGTCTCTGATCTTGCCGACACTAGTTAGCGTGCGGCTGTCTCTTATACA106160.14397770135856577No Hit
CCTGTCTCGGATCTTGCCGACACTAGTTAGCGTGCGGCTGTCTCTTATAC102610.13916307400529798No Hit
CCGGAGCGGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGCGAC86830.11776171636175833No Hit
CCCTGTCTGGGATCTTGCCGACACTAGTTAGCGTGCGGCTGTCTCTTATA81210.1101396865799654No Hit
CCCGGAGCGTACCAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCG80390.1090275754730134No Hit
CCCGGAGCAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGCGA78300.10619304838334308No Hit
CCGGAGCGACGTACCAGATTACGCTCCGGGCGACGTACCAGATTACGCTC77640.10529793456555245No Hit
TGTCTCTTATCTTGCCGACACTAGTTAGCGTGCGGCTGTCTCTTATACAC76980.1044028207477618No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)