FastQCFastQC Report
Thu 31 Aug 2023
SRR11943971_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR11943971_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7645710
Total Bases1.2 Gbp
Sequences flagged as poor quality0
Sequence length158
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGGAGCGGTACCAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCG133560.17468619657298015No Hit
CCCGGCTGCCGGGGATCTTGCCGACACTAGTTAGCGTGCGGCTGTCTCTT133400.17447692889214997No Hit
CCGGAGCGAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGCGA131230.17163873597089088No Hit
CCGGCTGTCCGGGATCTTGCCGACACTAGTTAGCGTGCGGCTGTCTCTTA129580.16948066301232978No Hit
CTGTCTCTGATCTTGCCGACACTAGTTAGCGTGCGGCTGTCTCTTATACA109690.14346607443912993No Hit
CCTGTCTCGGATCTTGCCGACACTAGTTAGCGTGCGGCTGTCTCTTATAC98070.1282680091188392No Hit
CCGGAGCGGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGCGAC88140.11528033367731708No Hit
TGTCTCTTATCTTGCCGACACTAGTTAGCGTGCGGCTGTCTCTTATACAC81660.10680499260369541No Hit
CCCGGAGCGTACCAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCG79790.10435917658399285No Hit
CCCTGTCTGGGATCTTGCCGACACTAGTTAGCGTGCGGCTGTCTCTTATA79280.1036921358513467No Hit
CCCGGAGCAGATTACGCTCCGGGCGACGTACCAGATTACGCTCCGGGCGA77830.10179564749382333No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)