FastQCFastQC Report
Thu 31 Aug 2023
SRR11944060_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR11944060_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences35297557
Total Bases3.5 Gbp
Sequences flagged as poor quality0
Sequence length100
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTGTCCGTACCAGTTCTGAGTCGGTTGTTCGACGCCCGGGGAAGGCCCC1670770.47333870726520816No Hit
CCGGAACCCAAAGACTTTGATTTCTCATAAGGTGCCAGCGGGGTCCTATT1183680.33534332135223976No Hit
GTCGGGACTACCCGCTGAGTTTAAGCATATAAATAAGCGGAGGAGAAGAA1166610.33050729261518014No Hit
CTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACGGCGCCGGAGGCACGA994460.28173621194237325No Hit
GTCGGGGCGGGCGGCGAGCAGAGGCGCCGGTTGCTAGCTTGGATTCTGAC962220.27260243534701284No Hit
CCCGACTGTCCCTATTAATCATTACTCCGATCCCGAAGGCCAACACAATA820890.2325628371391255No Hit
CTGTATTTAGCCTTGGACGGAGTTTACCGCCCGATTTGGGCTGCATTCCC778660.2205988363443963No Hit
GTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGAG773000.21899532593714627No Hit
CGGGCGGCGAGCAGAGGCGCCGGTTGCTAGCTTGGATTCTGACTTAGAGG730370.20691800285215206No Hit
GTCCGTACCAGTTCTGAGTCGGTTGTTCGACGCCCGGGGAAGGCCCCCGA727680.20615591045011983No Hit
CCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCA716370.20295172269287645No Hit
GTCTGACATGCGTGCGAGTCGACGGGTTCAGAAACCTGAGATGCGCAAGG715720.2027675739711958No Hit
GCGGTGTGTACAAAGGGCAGGGACGTAGTCAACGCGAGCTGATGACTCGC701220.19865964094908894No Hit
CAAAGGGCAGGGACGTAGTCAACGCGAGCTGATGACTCGCGCTTACTAGG674150.19099055495540385No Hit
ATCACGATGAAATTTCCCAAGATTACCCGGGCCTGTCGGCCAAGGCTATA664650.18829915056160967No Hit
CGCTGATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTG640170.1813638263973906No Hit
CTCGCCTGTATTTAGCCTTGGACGGAGTTTACCGCCCGATTTGGGCTGCA617190.17485346082166536No Hit
GTCAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGC593910.16825810352824136No Hit
GTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGTTAATCCAT593410.1681164506654101No Hit
CTCGGGGGTCCCGGCCCCGAACCCGTCGGCTGCTGGCGGAATGCTCGAGC577460.1635977243410925No Hit
GCATCATTCAAATTTCTGCCCTATCAACTTTCGATGGTAGGATAGGGGCC546250.15475575264316452No Hit
CAAATTTCTGCCCTATCAACTTTCGATGGTAGGATAGGGGCCTACCATGG542340.15364802725582397No Hit
GTCAAAGTGAAGAAATTCAACCAAGCGCGGGTAAACGGCGGGAGTAACTA526300.14910380341619675No Hit
CACGCTTTCACGGTTCGTATTCGTACTGGAAATCAGAATCAAACGAGCTT522060.1479025871393876No Hit
CGGGACTACCCGCTGAGTTTAAGCATATAAATAAGCGGAGGAGAAGAAAC518190.14680619398107353No Hit
CTTGGATTTATGAAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTT509110.14423377799205764No Hit
CGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT506850.1435935070520603No Hit
GTTAGTTTTACCCTACTGATGACCGCGCCGCGATAGTAATTCAACCTAGT498060.14110324972348653No Hit
CCCGATTCCGTGGCACGGCTCACCGAAGCAGCCGCGCCGTCCTACCTATT488960.1385251676199574No Hit
GTTAAAAAGCTCGTAGTTGGACCTTGGGCCGGGCCGGCCGGTCCGCCTCA485560.13756192815270474No Hit
CTTTTGTTCCACACGAGATTTCTGTTCTCGTTGAGCTCATCTTAGGACAC473950.1342727486777626No Hit
CCCAACTTTCGTTCTTGATTAATGAAAACATCCTTGGCAAATGCTTTCGC460570.13048211806839777No Hit
GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTGATGACTCGCGCTTACT449700.1274025848304459No Hit
CGACGCATCATTCAAATTTCTGCCCTATCAACTTTCGATGGTAGGATAGG431940.12237107514267914No Hit
CATCATTCAAATTTCTGCCCTATCAACTTTCGATGGTAGGATAGGGGCCT421210.11933120470632005No Hit
GTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGTTAATCCATTCA414190.11734239851216897No Hit
CGCCTGTATTTAGCCTTGGACGGAGTTTACCGCCCGATTTGGGCTGCATT412280.11680128457615352No Hit
GTTGATTCACACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGTGGCGCG411670.11662846808349937No Hit
GGCGGGAGTAACTATGACTCTCTTAAGGTAGCCAAATGCCTCGTCATCTA408230.11565389638722022No Hit
CTGACATGCGTGCGAGTCGACGGGTTCAGAAACCTGAGATGCGCAAGGAA405170.11478698086669285No Hit
GAAGAAACTTACGAGGATTCCCCTAGTAACGGCGAGCGAACCGGGAGCAG404360.11455750322890619No Hit
CTCCCCCCGGAACCCAAAGACTTTGATTTCTCATAAGGTGCCAGCGGGGT391370.11087736185254975No Hit
AAGAAACTTACGAGGATTCCCCTAGTAACGGCGAGCGAACCGGGAGCAGC378290.10717172296088368No Hit
CGAGTATATAGCCTTGGCCGACAGGCCCGGGTAATCTTGGGAAATTTCAT365780.10362756833284525No Hit
GTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTATG364310.1032111089161213No Hit
GTGTGTACAAAGGGCAGGGACGTAGTCAACGCGAGCTGATGACTCGCGCT359420.10182574391763147No Hit
GTCAGTCGGGACTACCCGCTGAGTTTAAGCATATAAATAAGCGGAGGAGA358980.10170108939833995No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)