FastQCFastQC Report
Fri 1 Sept 2023
SRR11944061_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR11944061_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences52442953
Total Bases5.2 Gbp
Sequences flagged as poor quality0
Sequence length100
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTGTCCGTACCAGTTCTGAGTCGGTTGTTCGACGCCCGGGGAAGGCCCC1952550.37231885092359307No Hit
GTCGGGACTACCCGCTGAGTTTAAGCATATAAATAAGCGGAGGAGAAGAA1464000.279160481294789No Hit
CTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACGGCGCCGGAGGCACGA1198640.2285607372262199No Hit
CCGGAACCCAAAGACTTTGATTTCTCATAAGGTGCCAGCGGGGTCCTATT1190290.2269685309292175No Hit
GTCGGGGCGGGCGGCGAGCAGAGGCGCCGGTTGCTAGCTTGGATTCTGAC1064530.20298818794586188No Hit
CTGTATTTAGCCTTGGACGGAGTTTACCGCCCGATTTGGGCTGCATTCCC909300.17338840549272655No Hit
GTCTGACATGCGTGCGAGTCGACGGGTTCAGAAACCTGAGATGCGCAAGG888290.16938214749272415No Hit
CCCGACTGTCCCTATTAATCATTACTCCGATCCCGAAGGCCAACACAATA877920.16740476075021937No Hit
CGGGCGGCGAGCAGAGGCGCCGGTTGCTAGCTTGGATTCTGACTTAGAGG852830.16262051452365772No Hit
GTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGAG849400.16196647049985916No Hit
CCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCA849200.16192833382208666No Hit
ATCACGATGAAATTTCCCAAGATTACCCGGGCCTGTCGGCCAAGGCTATA804850.15347152552603208No Hit
GTCCGTACCAGTTCTGAGTCGGTTGTTCGACGCCCGGGGAAGGCCCCCGA769520.14673468139751777No Hit
CAAAGGGCAGGGACGTAGTCAACGCGAGCTGATGACTCGCGCTTACTAGG759850.14489077302721684No Hit
CTCGCCTGTATTTAGCCTTGGACGGAGTTTACCGCCCGATTTGGGCTGCA728840.13897768113858883No Hit
CTCGGGGGTCCCGGCCCCGAACCCGTCGGCTGCTGGCGGAATGCTCGAGC720090.13730920148604142No Hit
CGGGACTACCCGCTGAGTTTAAGCATATAAATAAGCGGAGGAGAAGAAAC707910.13498667780969542No Hit
CGCTGATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTG679780.12962275408099158No Hit
GCGGTGTGTACAAAGGGCAGGGACGTAGTCAACGCGAGCTGATGACTCGC654710.1248423215222072No Hit
GTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGTTAATCCAT638620.12177422579540857No Hit
CCCGATTCCGTGGCACGGCTCACCGAAGCAGCCGCGCCGTCCTACCTATT636760.12141955469212422No Hit
GTCAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGC633050.12071211931944412No Hit
GTTAAAAAGCTCGTAGTTGGACCTTGGGCCGGGCCGGCCGGTCCGCCTCA579270.11045716666641561No Hit
CTTGGATTTATGAAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTT576250.10988130283205066No Hit
CAAATTTCTGCCCTATCAACTTTCGATGGTAGGATAGGGGCCTACCATGG575230.10968680577541086No Hit
CGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT562820.10732042491962647No Hit
CACGCTTTCACGGTTCGTATTCGTACTGGAAATCAGAATCAAACGAGCTT557800.10636319430753641No Hit
GTTAGTTTTACCCTACTGATGACCGCGCCGCGATAGTAATTCAACCTAGT541220.10320166372019515No Hit
AGAAATTTGAATGATGCGTCGCCGGCACGAAGGCCGTGCGATCCGTCAAG540480.10306055801243687No Hit
GTCAAAGTGAAGAAATTCAACCAAGCGCGGGTAAACGGCGGGAGTAACTA538220.10262961355360749No Hit
CTGACATGCGTGCGAGTCGACGGGTTCAGAAACCTGAGATGCGCAAGGAA529450.10095732023328281No Hit
GAAGAAACTTACGAGGATTCCCCTAGTAACGGCGAGCGAACCGGGAGCAG526360.1003681085616975No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)