FastQCFastQC Report
Mon 25 Sept 2023
SRR1200738_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1200738_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7263033
Total Bases203.1 Mbp
Sequences flagged as poor quality0
Sequence length24-49
%GC59

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGCTGAGGCGTGATGACGAGGCAC144716719.925105668664866No Hit
AGGCTGAGGCGTGATGACGAGGCA4691726.459725571947697No Hit
GGCTGAGGCGTGATGACGAGGCAC2523703.4747191703521105No Hit
CTCATCTCCGGGGGTAGAGCACTGTTTCGGC1608392.2144880795667596No Hit
TCATCTCCGGGGGTAGAGCACTGTTTCGGC1251121.7225861427312805No Hit
CATCTCCGGGGGTAGAGCACTGTTTCGGC989491.3623647310978761No Hit
TCTCCGGGGGTAGAGCACTGTTTCGGC621830.8561574758093484No Hit
ATCTCCGGGGGTAGAGCACTGTTTCGGC444850.6124851697631003No Hit
AAGGCTGAGGCGTGATGACGAGGCAC339060.4668297665727252No Hit
GGCACGCTGATATGTAGGTGAAGCGAC284460.39165456084255706No Hit
CTCCGGGGGTAGAGCACTGTTTCGGC161740.22268933653475073No Hit
CCGGGGGTAGAGCACTGTTTCGGC154720.21302395294087195No Hit
CGCAGGAGGTCTGCGGTTCGATCCCGCATAGCTCC149460.2057817994218118No Hit
AGGCTGAGGCGTGATGACGAGGCACT117960.1624114884236379No Hit
CGGTGCTGAAGCAACAAATGCCCTGCTTCC113200.1558577525394694No Hit
AAGGCTGAGGCGTGATGACGAGGCA103800.1429155010035064No Hit
AGGCACGCTGATATGTAGGTGAAGCGAC96400.13272692000710998No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)