FastQCFastQC Report
Mon 25 Sept 2023
SRR1200739_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1200739_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10452140
Total Bases307.2 Mbp
Sequences flagged as poor quality0
Sequence length24-49
%GC59

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGCTGAGGCGTGATGACGAGGCAC175927816.831749287705673No Hit
AGGCTGAGGCGTGATGACGAGGCA3861913.694851006588125No Hit
AAGGCTGAGGCGTGATGACGAGGCAC2907432.7816600236889286No Hit
ACTCATCTCCGGGGGTAGAGCACTGTTTCGGC976500.9342584389416905No Hit
CTCATCTCCGGGGGTAGAGCACTGTTTCGGC845650.8090687648653769No Hit
CGCAGGAGGTCTGCGGTTCGATCCCGCATAGCTCC719280.6881652943799068No Hit
AAGGCTGAGGCGTGATGACGAGGCA673050.6439351175931436No Hit
GGCTGAGGCGTGATGACGAGGCAC649500.621403846485026No Hit
GCTGAAGCAACAAATGCCCTGCTTCCAGGAAAAGCCTCTAAGC546760.5231081864575101No Hit
GCGAAGCTCTTGATCGAAGCCCCGGTAAACGGCGGCCGT532030.5090153786688658No Hit
TCTCCGGGGGTAGAGCACTGTTTCGGC462990.44296191975997257No Hit
AGCGAAGCTCTTGATCGAAGCCCCGGTAAACGGCGGCCGT329280.3150359639270044No Hit
ATCTCCGGGGGTAGAGCACTGTTTCGGC324550.3105105748679218No Hit
CATCTCCGGGGGTAGAGCACTGTTTCGGC284510.2722026302747571No Hit
AAGGCTGAGGCGTGATGACGAGGC282030.26982991042982585No Hit
GGCTTGTAGCTCAGGTGGTTAGAGCGCACCCC281870.2696768317301529No Hit
TAACGGGGCTAAACCATGCACCGAAGCTGCGGCAGCGACGC190480.18224019196068938No Hit
CCGGGGGTAGAGCACTGTTTCGGC184550.17656671265405935No Hit
GGTGGTTCAAGTCCACTCAGGCCT171940.16450219763608218No Hit
GGCACGCTGATATGTAGGTGAAGCGAC170020.16266525324000636No Hit
GGCTTGTAGCTCAGGTGGTTAGAGCGCACCC161860.1548582395566841No Hit
AGGCTGAGGCGTGATGACGAGGCACT160800.15384409317135056No Hit
GCGAAGCTCTTGATCGAAGCCCCGGTAAACGGCGGCCGTA150270.1437696012491222No Hit
TCATCTCCGGGGGTAGAGCACTGTTTCGGC123230.11789930100438763No Hit
AGGCACGCTGATATGTAGGTGAAGCGAC111640.10681066269682571No Hit
GAAGCAACAAATGCCCTGCTTCCAGGAAAAGCCTCTAAGC105460.10089799792195664No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)