FastQCFastQC Report
Mon 25 Sept 2023
SRR1200750_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1200750_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7139565
Total Bases212.9 Mbp
Sequences flagged as poor quality0
Sequence length24-49
%GC59

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGCTGAGGCGTGATGACGAGGCAC108872415.249164339844235No Hit
AGGCTGAGGCGTGATGACGAGGCA1724912.4159875286519554No Hit
AAGGCTGAGGCGTGATGACGAGGCAC1449792.030641922862247No Hit
GGCTGAGGCGTGATGACGAGGCAC826781.1580257340608286No Hit
CTCATCTCCGGGGGTAGAGCACTGTTTCGGC764421.0706814770927922No Hit
CGCAGGAGGTCTGCGGTTCGATCCCGCATAGCTCC706660.9897801896894278No Hit
GCGAAGCTCTTGATCGAAGCCCCGGTAAACGGCGGCCGT678480.950309997878022No Hit
ACTCATCTCCGGGGGTAGAGCACTGTTTCGGC457830.6412575556073794No Hit
TCTCCGGGGGTAGAGCACTGTTTCGGC449480.6295621652019415No Hit
GGCTTGTAGCTCAGGTGGTTAGAGCGCACCCC248180.3476122144696491No Hit
AAGGCTGAGGCGTGATGACGAGGCA239050.334824320529332No Hit
ATCTCCGGGGGTAGAGCACTGTTTCGGC227030.3179885609277316No Hit
CGCAGGGGGTCGCGGGTTCGAGTCCCGTCCGTTCCG188730.26434383607404655No Hit
GAAGCAACAAATGCCCTGCTTCCAGGAAAAGCCTCTAAGC179580.2515279292225787No Hit
CCGGGGGTAGAGCACTGTTTCGGC179200.2509956839107145No Hit
AGCGAAGCTCTTGATCGAAGCCCCGGTAAACGGCGGCCGT171940.24082699716299244No Hit
CATCTCCGGGGGTAGAGCACTGTTTCGGC162840.22808112258940147No Hit
GAGCGGTAGTTCAGTCGGTTAGAATACCTGCC137850.19307899010654012No Hit
GGCTTGTAGCTCAGGTGGTTAGAGCGCACCC124050.17375008141252302No Hit
AGCTCTTGATCGAAGCCCCGGTAAACGGCGGCCGT123800.17339992002313864No Hit
GCGAAGCTCTTGATCGAAGCCCCGGTAAACGGCGGCCG116070.16257292986337404No Hit
GAGCGGTAGTTCAGTCGGTTAGAATACCTGC114400.16023385178228644No Hit
GGGCTACAGCTCAGCTGGGAGAGCGCCTGC106120.1486365065658762No Hit
GCGAAGCTCTTGATCGAAGCCCCGGTAAACGGCGGCC97560.13664698059335548No Hit
AGGCTGAGGCGTGATGACGAGGCACT95380.1335935732779238No Hit
GCAGGAGGTCTGCGGTTCGATCCCGCATAGCTCC94250.13201084379790645No Hit
GCGAAGCTCTTGATCGAAGCCCCGGTAAACGGCGGCCGTA93950.13159065013064522No Hit
TCATCTCCGGGGGTAGAGCACTGTTTCGGC89440.12527373866615124No Hit
AAGGCTGAGGCGTGATGACGAGGC85510.11976920162502898No Hit
GGCACGCTGATATGTAGGTGAAGCGAC82140.1150490260961277No Hit
CGGGGCTAAACCATGCACCGAAGCTGCGGCAGCGACGC79150.11086109587909068No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)