FastQCFastQC Report
Fri 1 Sept 2023
SRR12164924.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR12164924.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13572040
Total Bases678.6 Mbp
Sequences flagged as poor quality0
Sequence length50
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCATGCTATTGCTCGAATATATTAGCATGGAATAATAGAATTCGTATGCC204490.1506700540228293No Hit
CATGCTAATTGCTCGAATATATTAGCATGGAATAATAGAATTCGTATGCC176160.1297962576001839No Hit
CCCATGCTTTGCTCGAATATATTAGCATGGAATAATAGAATTCGTATGCC151620.11171496694675229No Hit
CATGTTAATTGCTCGAATATATTAGCATGGAATAATAGAATTCGTATGCC147390.1085982652571021No Hit
TTCCATGCTTGCTCGAATATATTAGCATGGAATAATAGAATTCGTATGCC143250.10554787636935935No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)