FastQCFastQC Report
Mon 18 Sept 2023
SRR12285187_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR12285187_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences410768071
Total Bases20.9 Gbp
Sequences flagged as poor quality0
Sequence length51
%GC58

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGAGCACACGTCTGAACTCCAGTCACATCACGATCTCGTATGCCGTCTT4966620.12091056609898972TruSeq Adapter, Index 1 (100% over 48bp)
ACGAGCACACGTCTGAACTCCAGTCACATCACGATCTCGTATGCCGTCTT4965610.12088597801458625TruSeq Adapter, Index 1 (98% over 50bp)
GCGAGCACACGTCTGAACTCCAGTCACATCACGATCTCGTATGCCGTCTT4128010.1004949092063195TruSeq Adapter, Index 1 (100% over 48bp)

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)