FastQCFastQC Report
Sat 2 Sept 2023
SRR12343641_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR12343641_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences130244408
Total Bases14.8 Gbp
Sequences flagged as poor quality0
Sequence length72-122
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCCAGTAAAACGCGGCGTGTTCGAATTCTGTAGGCACCATCAATAGATC13387171.0278498866530992No Hit
AGGTGCGTGCCGCACTCACGAGGGACTGCCACTGTAGGCACCATCAATAG12522290.9614455002167924No Hit
ACGAAACTTGCCCCGAGATGAGTTCTCCCCTGTAGGCACCATCAATAGAT11358080.8720589370716016No Hit
TAGGTGCGTGCCGCACTCACGAGGGACTGCCACTGTAGGCACCATCAATA5718410.43905224706461105No Hit
AAAAGCCAGTGGCGCGAAGCTACCGTGCGCTGGCTGTAGGCACCATCAAT5550700.42617568655999416No Hit
TTGAGCTAACCGATACTAATGAACCGTGCTGTAGGCACCATCAATAGATC5446920.4182075901485153No Hit
AGCTCTCTGGGTCCCTACCGACGCTGCTGTAGGCACCATCAATAGATCGG5299700.4069042257844959No Hit
TGTCGATGGCCCGAGGTAGAGCACTCAATGGGCTCTGTAGGCACCATCAA5252120.403251093897252No Hit
AGTAGCATGGGGCACGTGGAATCCCGTGTGACTGTAGGCACCATCAATAG5238090.40217388834075707No Hit
CCCCAGTAAAACGCGGCGTGTTCGAATTCTGTAGGCACCATCAATAGATC5160790.39623889265172907No Hit
TCAGGGCTCAAGTGATTCACCGAAGCGACGAGACCTGTAGGCACCATCAA5053920.3880335499701454No Hit
AGGTGCGTGCCGCACTCACGAGGGACTGCCCTGTAGGCACCATCAATAGA4553030.34957585280743875No Hit
TGAAGGTCACGGCGAGACGAGCCGTTTACTGTAGGCACCATCAATAGATC4540910.34864529462178523No Hit
TGTCGATGGCCCGAGGTAGAGCACTCAATGGGCTACTGTAGGCACCATCA4385180.33668854328087544No Hit
AAAAAGCCAGTGGCGCGAAGCTACCGTGCGCTGGCTGTAGGCACCATCAA4328440.3323321182434182No Hit
TCGGGGCTAAACCATGCACCGAAGCTGCGGCCTGTAGGCACCATCAATAG3403250.2612972067100186No Hit
ACGGGGCTAAACCATGCACCGAAGCTGCGGCCTGTAGGCACCATCAATAG3386640.26002191203479535No Hit
TTGGGTTGGGCCAACCTATGGTGTACCGGTCTGTAGGCACCATCAATAGA3249950.24952702767860865No Hit
TCGCATTTATTAGACTGATGATTCATGATAACTCGCTGTAGGCACCATCA2841490.2181659883624332No Hit
ACTAAGCGTACACGGTGGATGCCCTGGCAGTCACTGTAGGCACCATCAAT2821010.21659356000911764No Hit
TGTCGATGGCCCGAGGTAGAGCACTCAATGGGCCTGTAGGCACCATCAAT2774570.2130279558720095No Hit
GGGGCGCTTGAGAGAACCATGTCGAAGGAACTGTAGGCACCATCAATAGA2674710.20536083207503236No Hit
GGGAAAGGCTTACGGTGGATACCTAGGCACCCACTGTAGGCACCATCAAT2654160.20378302921074354No Hit
TAGGGCTACACACGTGCTACAATGGCGCACTGTAGGCACCATCAATAGAT2606890.20015369872923833No Hit
AAAAGCCCGATCCAGCAATATCGCGTGAGTGACTGTAGGCACCATCAATA2538670.19491585389216864No Hit
CGCATTTATTAGACTGATGATTCATGATAACTCGCTGTAGGCACCATCAA2299190.1765288840654103No Hit
TTGGGTTGGGCCAACCTATGGTGTACCGGTTCTGTAGGCACCATCAATAG2260600.1735659929445877No Hit
TGGAAAGGCTTACGGTGGATACCTAGGCACCCACTGTAGGCACCATCAAT2212060.16983915347828216No Hit
TCTGATGATTCATGATAACTCGACGGATCGCCTGTAGGCACCATCAATAG2144150.16462511004695113No Hit
TGCATTTATTAGCTGATGATTCATGATAACTCCTGTAGGCACCATCAATA2108720.16190483970720648No Hit
TAGGTGCGTGCCGCACTCACGAGGGACTGCCCTGTAGGCACCATCAATAG2098880.1611493370218244No Hit
TGTGATAAATGCCCTGCTTCCAGGAAAAGCTGTAGGCACCATCAATAGAT2096600.16097428152155294No Hit
GGTGCGTGCCGCACTCACGAGGGACTGCCACTGTAGGCACCATCAATAGA2064780.15853118239057143No Hit
TGCATTTATTAGACTGATGATTCATGATAACTCCTGTAGGCACCATCAAT1981100.15210633841569612No Hit
TAGGAAAGGCTTACGGTGGATACCTAGGCACCCACTGTAGGCACCATCAA1944950.14933078739165523No Hit
AAAAGCCCGATCCAGCAATATCGCGTGAGTGAACTGTAGGCACCATCAAT1927140.14796335824260493No Hit
AGTAGGGCGGGACACGTGGTATCCTGTCTGACTGTAGGCACCATCAATAG1899740.14585962109021985No Hit
TCGAGTAGCATGGGGCACGTGGAATCCCGTGTGAATCTGTAGGCACCATC1817850.1395722110388033No Hit
ACGAGCGCAACCCTCGTGTTTAGTTGCCACCCTGTAGGCACCATCAATAG1803520.13847197186385155No Hit
CGCATTTATTAGCTGATGATTCATGATAACTCGCTGTAGGCACCATCAAT1786890.13719514161406454No Hit
TCTAAGTCAGAATCCGGGCTAGAAGCGACGCATCTGTAGGCACCATCAAT1744810.13396429273186147No Hit
GTAGGGCTACACACGTGCTACAATGGCGCACTGTAGGCACCATCAATAGA1739330.13354354530138446No Hit
TCCCAGTAAAACGCGGCGTGTTCGAATTCCTGTAGGCACCATCAATAGAT1710420.13132387226943362No Hit
TTGCAGTTAAAAAGCTCGTAGTTGAACCTTGCTGTAGGCACCATCAATAG1691080.1298389716662538No Hit
AGGTGCGTGCCGCACTCACGAGGGACTGCCAGCTGTAGGCACCATCAATA1678120.12884391934892128No Hit
GCATTTATTAGACTGATGATTCATGATAACTCCTGTAGGCACCATCAATA1639240.12585876239692378No Hit
TGAATGCATTGGATGGATGCCCGGGCATTGAGACTGTAGGCACCATCAAT1637260.1257067405151091No Hit
GTGCGTGCCGCACTCACGAGGGACTGCCACTGTAGGCACCATCAATAGAT1621620.12450592120622946No Hit
TAGAGTAGGGCGGGACACGTGGTATCCTGTCTGAACTGTAGGCACCATCA1579670.12128505355869099No Hit
GGAAAGGCTTACGGTGGATACCTAGGCACCCACTGTAGGCACCATCAATA1520740.1167604831064993No Hit
TCGGGGCTAAGCGATCTGCCGAAGCTGTGGGCTGTAGGCACCATCAATAG1511550.11605488659444022No Hit
TCGCATTTATTAGCTGATGATTCATGATAACTCGCTGTAGGCACCATCAA1441220.1106550386408912No Hit
CCTAAGATCAGGCCGAAAGGCGTAGTCGATGGACTGTAGGCACCATCAAT1421530.10914326548284514No Hit
TGTAGGGCTACACACGTGCTACAATGGCGCACTGTAGGCACCATCAATAG1380320.10597921409416672No Hit
TCAGGGCTCAAGTGATTCACCGAAGCGACGAGACTGTAGGCACCATCAAT1374250.10551316721405805No Hit
AACGGGGCTAAACCATGCACCGAAGCTGCGGCACTGTAGGCACCATCAAT1369280.10513157693495755No Hit
TCGCATTTATTAGACTGATGATTCATGATAACTCCTGTAGGCACCATCAA1365280.1048244620222006No Hit
TGAATGCATTGGATGGATGCCCGGGCATTGAGCTGTAGGCACCATCAATA1357150.1042002509620221No Hit
TTGAAGTGATAAATGCCCTGCTTCCAGGAAAAGCTGTAGGCACCATCAAT1317570.10116134890029213No Hit
GCCTAAGATCAGGCCGAAAGGCGTAGTCGATGGACTGTAGGCACCATCAA1307570.10039356161839978No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)