FastQCFastQC Report
Sat 23 Sept 2023
SRR12343643_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR12343643_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences392596726
Total Bases47.5 Gbp
Sequences flagged as poor quality0
Sequence length72-122
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCCAGTAAAACGCGGCGTGTTCGAATTCTGTAGGCACCATCAATAGATC16608100.4230320555449563No Hit
AGGTGCGTGCCGCACTCACGAGGGACTGCCACTGTAGGCACCATCAATAG16541080.4213249603105452No Hit
ACAGACCCGGGTTCGATTCCCGGCTGGTGCACCACTGTAGGCACCATCAA13461880.34289333324700216No Hit
TGACCCGGGTTCGATCCCCGGCAACGGCGCCACTGTAGGCACCATCAATA13015300.3315183020655144No Hit
AAAAGCCAGTGGCGCGAAGCTACCGTGCGCTGGCTGTAGGCACCATCAAT10660870.2715476032777716No Hit
ACCCGGGTTCGATCCCCGGCAACGGCGCCACTGTAGGCACCATCAATAGA10018530.2551862849717193No Hit
GTGACCCGGGTTCGATCCCCGGCAACGGCGCCACTGTAGGCACCATCAAT9942600.2532522392965651No Hit
ATCAGAAGGTTGCGTGTTCGATTCACGTCGGGCTGTAGGCACCATCAATA9790850.2493869498035498No Hit
TCGCTGGTTCGATTCCGGCAGGTCGGACCACTGTAGGCACCATCAATAGA8644560.22018930438049553No Hit
TGTCGATGGCCCGAGGTAGAGCACTCAATGGGCTCTGTAGGCACCATCAA7899610.20121436264855658No Hit
TAGGTGCGTGCCGCACTCACGAGGGACTGCCACTGTAGGCACCATCAATA7631960.1943969344257853No Hit
ACAGGTTCGATCCCTGTATAGGCCACCACTGTAGGCACCATCAATAGATC6729770.1714168650504742No Hit
AGACCCGGGTTCGAGTCCCGGCAACGGAGCCACTGTAGGCACCATCAATA6623170.16870161061913694No Hit
AGACCCGGGTTCGATTCCCGGCTGGTGCACCACTGTAGGCACCATCAATA6473200.1648816602714104No Hit
TCAGGGCTCAAGTGATTCACCGAAGCGACGAGACCTGTAGGCACCATCAA6467620.16473952969235917No Hit
AGTAGCATGGGGCACGTGGAATCCCGTGTGACTGTAGGCACCATCAATAG6453880.16438955224501794No Hit
CCCCAGTAAAACGCGGCGTGTTCGAATTCTGTAGGCACCATCAATAGATC6164690.15702346942139297No Hit
AAAAAGCCAGTGGCGCGAAGCTACCGTGCGCTGGCTGTAGGCACCATCAA6118950.15585840621605182No Hit
AGGTGCGTGCCGCACTCACGAGGGACTGCCCTGTAGGCACCATCAATAGA6067630.15455121243165945No Hit
TGTCGATGGCCCGAGGTAGAGCACTCAATGGGCTACTGTAGGCACCATCA5986730.1524905737497159No Hit
TGTGACCCGGGTTCGATCCCCGGCAACGGCGCCACTGTAGGCACCATCAA5714650.14556030709232148No Hit
AGCTCTCTGGGTCCCTACCGACGCTGCTGTAGGCACCATCAATAGATCGG5437430.13849911728504835No Hit
TGAAGGTCACGGCGAGACGAGCCGTTTACTGTAGGCACCATCAATAGATC5288280.13470005350987058No Hit
TCCGATGTCGTCCAGCGGTTAGGATATCTGGCCTGTAGGCACCATCAATA4851920.12358534034234406No Hit
ACCCGGGTTCGATTCCCGGCTGGTGCACCACTGTAGGCACCATCAATAGA4492250.11442403113672425No Hit
TTGGGTTGGGCCAACCTATGGTGTACCGGTCTGTAGGCACCATCAATAGA4388390.11177856842341574No Hit
TCTCCGGTTCGAACCCGGGCGAAGCCACCACTGTAGGCACCATCAATAGA4321610.11007758633218964No Hit
TGTCGATGGCCCGAGGTAGAGCACTCAATGGGCCTGTAGGCACCATCAAT4026210.1025533259286528No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)