FastQCFastQC Report
Sat 2 Sept 2023
SRR12343656_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR12343656_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26953361
Total Bases1.9 Gbp
Sequences flagged as poor quality0
Sequence length72
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAGCCAGTGGCGCGAAGCTACCGTGCGCTGGCTGTAGGCACCATCAA6007522.22885746976045No Hit
AAAAGCCAGTGGCGCGAAGCTACCGTGCGCTGGCTGTAGGCACCATCAAT3809231.4132671617465442No Hit
AAAAAAGCCAGTGGCGCGAAGCTACCGTGCGCTGGCTGTAGGCACCATCA2610910.9686769675959892No Hit
AAGCCAGTGGCGCGAAGCTACCGTGCGCTGGCTGTAGGCACCATCAATAG1668320.6189654789248733No Hit
ATCCCCGTGTCGGCGGTTCGATTCCGTCCCTGTAGGCACCATCAATAGAT1351810.501536710022917No Hit
AGCCAGTGGCGCGAAGCTACCGTGCGCTGGCTGTAGGCACCATCAATAGA1050370.38969908057106495No Hit
ATCGCGCTTGGTTGAAAAGCCAGTGGCGCGAAGCCTGTAGGCACCATCAA1028150.3814552107249259No Hit
AAAGCCAGTGGCGCGAAGCTACCGTGCGCTGGCTGTAGGCACCATCAATA915630.33970902552746574No Hit
TCGGGGCTGAAGCCATGCACCGAAGCTGAGGACTGTAGGCACCATCAATA864170.3206167869008989No Hit
ATCCGTGTGTCGACAGTTCGATTCTGTCCTGTAGGCACCATCAATAGATC645950.23965471319142723No Hit
ATTGGATGGATGCCCGGGCATTGAGCTGTAGGCACCATCAATAGATCGGA609860.2262649173882248No Hit
AAAGTTCCCTGGAAAGGGGCGCCCTGTAGGCACCATCAATAGATCGGAAG583660.21654442279016706No Hit
AGCATGGGGCACGTGGAATCCCGTGTGACTGTAGGCACCATCAATAGATC563190.2089498226213792No Hit
TCTGATGATTCATGATAACTCGACGGATCGCCTGTAGGCACCATCAATAG538590.19982294601404255No Hit
ATTGGATGGATGCCCGGGCATTGACTGTAGGCACCATCAATAGATCGGAA534120.19816452575246554No Hit
ACGCTATTGGAGCTGGAATTACCGCGGCTGTAGGCACCATCAATAGATCG521270.19339703126448682No Hit
TAGGGCGGGGCACGTGAAACCCTGTCTGACTGTAGGCACCATCAATAGAT500300.18561692547359865No Hit
AGGTGCGTGCCGCACTCACGAGGGACTGCCACTGTAGGCACCATCAATAG494140.18333149620932246No Hit
ACCTCAGCCTGCTAACTAGCTACGTGGAGGCCTGTAGGCACCATCAATAG481840.17876805790565414No Hit
TTTGTCGCTAAGATTCGACTGTAGGCACCATCAATAGATCGGAAGAGCAC467190.17333274317811423No Hit
TGTGGGGATGACGTCAAGTCCTCATGGCCCTCTGTAGGCACCATCAATAG447860.16616109582771516No Hit
ACTCCGCAAGTAGTGGCGAGCGAACGCGGACCTGTAGGCACCATCAATAG447170.1659050980692167No Hit
TCAGGGCTCAAGTGATTCACCGAAGCGACGAGACCTGTAGGCACCATCAA436010.16176461258393712No Hit
TATTGGATGGATGCCCGGGCATTGAGCTGTAGGCACCATCAATAGATCGG410600.15233721686879792No Hit
TATTGGATGGATGCCCGGGCATTGACTGTAGGCACCATCAATAGATCGGA408790.15166568651679468No Hit
TAAGCCAGTGGCGCGAAGCTACCGTGCGCTGGCTGTAGGCACCATCAATA407740.15127612471038399No Hit
TCGGGGCTGAAGCCATGCACCGAAGCTGAGGCTGTAGGCACCATCAATAG395470.1467238167440417No Hit
AGCTCTCTGGGTCCCTACCGACGCTGGGGCTGTAGGCACCATCAATAGAT364330.1351705265996326No Hit
ATTGGATGGATGCCCGGGCATTGAGACTGTAGGCACCATCAATAGATCGG361550.13413911534075473No Hit
TCGCGCTTGGTTGAAAAGCCAGTGGCGCGAAGCCTGTAGGCACCATCAAT348910.12944953321405817No Hit
ACTCGGCTCTCACCCGAGAGACCCGGGTCTGTAGGCACCATCAATAGATC338950.12575426122181943No Hit
ATTGGATGGATGCCCGGGCATTGCTGTAGGCACCATCAATAGATCGGAAG325000.12057865436521997No Hit
TAGGTGCGTGCCGCACTCACGAGGGACTGCCACTGTAGGCACCATCAATA319480.11853067229723226No Hit
TAGCATGGGGCACGTGGAATCCCGTGTGACTGTAGGCACCATCAATAGAT301260.11177084742789592No Hit
TCATCGCGCTTGGTTGAAAAGCCAGTGGCGCGAAGCCTGTAGGCACCATC300260.11139983618369523No Hit
TGTTCGGATTGTTCTCTGCAACTCGGGAACATGAAGTCTGTAGGCACCAT296570.11003080469259474No Hit
AGCCCCGTAACTTCGGGAGAAGGGGTGCCTCCTGTAGGCACCATCAATAG275680.10228037980124259No Hit
TCGATGGCCCGAGGTAGAGCACTCAATGGGCTACTGTAGGCACCATCAAT274490.10183887642064379No Hit
AGACGGAAAGACCCCGTGAACCTTTACTGTAGGCACCATCAATAGATCGG274480.10183516630820179No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)