FastQCFastQC Report
Sat 2 Sept 2023
SRR12343662_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR12343662_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26866010
Total Bases1.9 Gbp
Sequences flagged as poor quality0
Sequence length72
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TAAGGGACGGGGGAAGCCCGTCCGAGAGCCTGTAGGCACCATCAATAGAT1710390.6366371485754677No Hit
TAAGGGACGGGGGAAGCCCGTCCGAGAGCGTGCTGTAGGCACCATCAATA1654860.6159679088930585No Hit
AAAAGCCAGTGGCGCGAAGCTACCGTGCGCTGGCTGTAGGCACCATCAAT1635380.6087171113239368No Hit
ATCCGTGTGTCGACAGTTCGATTCTGTCCTGTAGGCACCATCAATAGATC1623320.6042281678596859No Hit
AAAAAGCCAGTGGCGCGAAGCTACCGTGCGCTGGCTGTAGGCACCATCAA1313820.4890268409786194No Hit
AACGGGCGGGAACCCTCTCGAGGGGTTGCCTGTAGGCACCATCAATAGAT1060490.3947329730019456No Hit
AAGCCAGTGGCGCGAAGCTACCGTGCGCTGGCTGTAGGCACCATCAATAG962660.3583189316165668No Hit
AAAGGGACGGGGGAAGCCCGTCCGAGAGCGTGCTGTAGGCACCATCAATA895560.33334313506173785No Hit
ATCGCGCTTGGTTGAAAAGCCAGTGGCGCGAAGCCTGTAGGCACCATCAA789340.2938061885631696No Hit
AAAGGGACGGGGGAAGCCCGTCCGAGAGCCTGTAGGCACCATCAATAGAT770120.2866521675529787No Hit
TCGAGGCGACGGGGGCGGTTCGCCGCCCGCCTGTAGGCACCATCAATAGA726550.2704346495813856No Hit
AGGTGCGTGCCGCACTCACGAGGGACTGCCACTGTAGGCACCATCAATAG723580.26932916350436853No Hit
TTGAGGCGAAGCCAGAGGAAACTCTGGTGGAGCTGTAGGCACCATCAATA641940.23894132400010273No Hit
AGACGGAAAGACCCCGTGAACCTTTACTGTAGGCACCATCAATAGATCGG590020.21961578961669412No Hit
ATCCGTGTGTCGGCAGTTCGATTCTGCCCTGTAGGCACCATCAATAGATC577440.21493329303458164No Hit
TATGTACACGGAGTCGACCCGCAACGCGACTGTAGGCACCATCAATAGAT547810.20390448749181586No Hit
TAACGGGCGGGAACCCTCTCGAGGGGTTGCCTGTAGGCACCATCAATAGA527840.19647130333086305No Hit
ATCCTTGTGTCCCTGGTTCGATTCCTGTAGGCACCATCAATAGATCGGAA491410.18291141855452298No Hit
TATGTACACGGAGTCAAGACCCGCAACGCGACTGTAGGCACCATCAATAG464050.17272754681472985No Hit
TAGGTGCGTGCCGCACTCACGAGGGACTGCCACTGTAGGCACCATCAATA460950.17157367245824742No Hit
AAAGCCAGTGGCGCGAAGCTACCGTGCGCTGGCTGTAGGCACCATCAATA426090.15859816921083555No Hit
ACGGGCGTGGAAGTTCGAGTCTTCTCCTGTAGGCACCATCAATAGATCGG424410.15797284375312895No Hit
AAACGGGCGGGAACCCTCTCGAGGGGTTGCCTGTAGGCACCATCAATAGA422960.15743312832832268No Hit
AAAAAAGCCAGTGGCGCGAAGCTACCGTGCGCTGGCTGTAGGCACCATCA374400.13935824486032725No Hit
ATGTACACGGAGTCGACCCGCAACGCGACTGTAGGCACCATCAATAGATC353460.13156400969105572No Hit
TAAGGGACGGGGGAAGCCCGTCCGAGAGCGCTGTAGGCACCATCAATAGA349410.1300565286769416No Hit
TCGACGGGTGCGGAAACCCGGAAGGCCTGTAGGCACCATCAATAGATCGG340060.12657629473077692No Hit
CAAGGGACGGGGGAAGCCCGTCCGAGAGCCTGTAGGCACCATCAATAGAT331880.12353155529980075No Hit
TCGGAGGCGGGGCCCGGCCCCTCCTTTCTGTAGGCACCATCAATAGATCG321190.11955254985760819No Hit
ATTGGATGGATGCCCGGGCATTGACTGTAGGCACCATCAATAGATCGGAA308300.11475466583984746No Hit
CCAGATTGAGGTTCTGGTCCCTGTAGGCACCATCAATAGATCGGAAGAGC303800.11307968693527622No Hit
AGGCTGTGCGAGTTCAAATCTCGCTGTAGGCACCATCAATAGATCGGAAG298770.1112074327374999No Hit
ATGTACACGGAGTCAAGACCCGCAACGCGACTGTAGGCACCATCAATAGA292820.10899273840812237No Hit
CAAGGGACGGGGGAAGCCCGTCCGAGAGCGTGCTGTAGGCACCATCAATA291920.10865774262720812No Hit
TAAGCCAGTGGCGCGAAGCTACCGTGCGCTGGCTGTAGGCACCATCAATA291140.10836741295041578No Hit
TAAGGGACGGGGGAAGCCCGTCCGAGAGCGTGTCTCTGTAGGCACCATCA287940.10717631684049846No Hit
AGCCAGTGGCGCGAAGCTACCGTGCGCTGGCTGTAGGCACCATCAATAGA287290.1069343754431715No Hit
AGGACGGCGCGGCTGCTTCGTTGAGCCGCGTCGCCTGTAGGCACCATCAA285900.10641699307042617No Hit
TAGGGACGGGGGAAGCCCGTCCGAGAGCGTGCTGTAGGCACCATCAATAG283130.10538595050027896No Hit
TAGACCCGGGTTCGTTTCCCGGCTGGTGCACCCTGTAGGCACCATCAATA276860.10305214655990973No Hit
TTGAGGCGACGGGGGCGGTTCGCCGCCCGCCTGTAGGCACCATCAATAGA271690.10112778190732453No Hit
ACGGCGGCGGCGCCGGTTCGATTCCGGCTGTAGGCACCATCAATAGATCG270190.10056945560580079No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)