FastQCFastQC Report
Sat 2 Sept 2023
SRR12343682_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR12343682_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21593187
Total Bases1.5 Gbp
Sequences flagged as poor quality0
Sequence length72
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAGCCAGTGGCGCGAAGCTACCGTGCGCTGGCTGTAGGCACCATCAA12713745.887847866088503No Hit
AAAAGCCAGTGGCGCGAAGCTACCGTGCGCTGGCTGTAGGCACCATCAAT8166243.7818595281928507No Hit
AAAAAAGCCAGTGGCGCGAAGCTACCGTGCGCTGGCTGTAGGCACCATCA5557242.5736080551703644No Hit
AAGCCAGTGGCGCGAAGCTACCGTGCGCTGGCTGTAGGCACCATCAATAG1773420.8212868253306008No Hit
AAAGCCAGTGGCGCGAAGCTACCGTGCGCTGGCTGTAGGCACCATCAATA1288560.5967437784890206No Hit
ATCGCGCTTGGTTGAAAAGCCAGTGGCGCGAAGCCTGTAGGCACCATCAA1254410.5809286049345102No Hit
AGCCAGTGGCGCGAAGCTACCGTGCGCTGGCTGTAGGCACCATCAATAGA758650.3513376696084742No Hit
TAAGGGACGGGGGAAGCCCGTCCGAGAGCCTGTAGGCACCATCAATAGAT653070.3024426176645439No Hit
AGGTGCGTGCCGCACTCACGAGGGACTGCCACTGTAGGCACCATCAATAG573470.2655791384569587No Hit
ATGTACACGGAGTCGACCCGCAACGCGACTGTAGGCACCATCAATAGATC545470.25261208546936587No Hit
AGGTCAGGCGGGATTACCCGCTGAGTCTGTAGGCACCATCAATAGATCGG544770.252287909144676No Hit
ACCGGGCCTAAGTTCCCTGGAAAGGGGCGCCCTGTAGGCACCATCAATAG510390.23636622051205317No Hit
TAAGCCAGTGGCGCGAAGCTACCGTGCGCTGGCTGTAGGCACCATCAATA506020.23434243402791818No Hit
ATCCGTGTGTCGACAGTTCGATTCTGTCCTGTAGGCACCATCAATAGATC453250.20990417023665844No Hit
AGCATGGGGCACGTGGAATCCCGTGTGACTGTAGGCACCATCAATAGATC438940.20327707994192795No Hit
AAAGGGACGGGGGAAGCCCGTCCGAGAGCCTGTAGGCACCATCAATAGAT438380.20301773888217614No Hit
TATGTACACGGAGTCGACCCGCAACGCGACTGTAGGCACCATCAATAGAT420110.19455673680777183No Hit
TAGGATACTCGGCTCTCACCCGAGAGACCCGGGTCTGTAGGCACCATCAA416250.19276913593162512No Hit
AGGTCAGGCGGGATTACCCGCTGAGTTCTGTAGGCACCATCAATAGATCG398460.18453042619415097No Hit
ATTGGATGGATGCCCGGGCATTGACTGTAGGCACCATCAATAGATCGGAA393130.18206205503615563No Hit
AAAGGGGCGCCAGAGAGGGTGAGAGCCCCGTCGTGCTGTAGGCACCATCA385410.17848685328386218No Hit
ACCTCAGCCTGCTAACTAGCTACGTGGAGGCCTGTAGGCACCATCAATAG378590.1753284496633128No Hit
TAGGTGCGTGCCGCACTCACGAGGGACTGCCACTGTAGGCACCATCAATA354050.16396375393775822No Hit
TATCGCGCTTGGTTGAAAAGCCAGTGGCGCGAAGCCTGTAGGCACCATCA334440.15488218575609056No Hit
ATTGGATGGATGCCCGGGCATTGCTGTAGGCACCATCAATAGATCGGAAG327550.1516913645030722No Hit
TCGCGCTTGGTTGAAAAGCCAGTGGCGCGAAGCCTGTAGGCACCATCAAT325910.15093186568522748No Hit
ATCCTTGTGTCCCTGGTTCGATTCCTGTAGGCACCATCAATAGATCGGAA310330.1437166269157026No Hit
ACACGGAGTCGACCCGCAACGCGACTGTAGGCACCATCAATAGATCGGAA309960.1435452765726523No Hit
AGTAGCATGGGGCACGTGGAATCCCGTGTGACTGTAGGCACCATCAATAG300000.13893271058135143No Hit
AAAAAGCCAGTGGCGCGAAGCTACCGTGCGCTGCTGTAGGCACCATCAAT287700.133236469447516No Hit
TGACCGGGCCTAAGTTCCCTGGAAAGGGGCGCCCTGTAGGCACCATCAAT236460.10950676248022119No Hit
TCCCAGTAAAACGCGGCGTGTTCGAATTCTGTAGGCACCATCAATAGATC229570.10631594122720284No Hit
AAAGTTCCCTGGAAAGGGGCGCCCTGTAGGCACCATCAATAGATCGGAAG224350.1038985120630873No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)