FastQCFastQC Report
Sat 2 Sept 2023
SRR12343683_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR12343683_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences121778469
Total Bases14.1 Gbp
Sequences flagged as poor quality0
Sequence length72-122
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAGAGGGTGAGAGCCCCGTCGTGCCCGGCTGTAGGCACCATCAATAGAT9495750.7797560667313037No Hit
ACCGGGCCTAAGTTCCCTGGAAAGGGGCGCCCTGTAGGCACCATCAATAG9180820.753895173374203No Hit
TCTAAGTCAGAATCCGGGCTAGAAGCGACGCATCTGTAGGCACCATCAAT8994610.7386042930134061No Hit
GACCGGGCCTAAGTTCCCTGGAAAGGGGCGCCCTGTAGGCACCATCAATA6431140.5281015644892038No Hit
TCCCAGTAAAACGCGGCGTGTTCGAATTCTGTAGGCACCATCAATAGATC5621590.46162429583508724No Hit
TCAGGGCTCAAGTGATTCACCGAAGCGACGAGACCTGTAGGCACCATCAA5219990.42864638083108103No Hit
TGACCGGGCCTAAGTTCCCTGGAAAGGGGCGCCCTGTAGGCACCATCAAT5176790.42509895571112816No Hit
ATGTACACGGAGTCGACCCGCAACGCGACTGTAGGCACCATCAATAGATC5027770.41286198137373525No Hit
TGAAGGTCACGGCGAGACGAGCCGTTTACTGTAGGCACCATCAATAGATC4732630.38862617003339067No Hit
AAAAGCCAGTGGCGCGAAGCTACCGTGCGCTGGCTGTAGGCACCATCAAT4652360.3820346928487005No Hit
AGGTGCGTGCCGCACTCACGAGGGACTGCCACTGTAGGCACCATCAATAG4611800.3787040548194115No Hit
ACAGACCCGGGTTCGTTTCCCGGCTGGTGCACCACTGTAGGCACCATCAA4555100.3740480593494733No Hit
TGAATGCATTGGATGGATGCCCGGGCATTGAGACTGTAGGCACCATCAAT4352710.35742853689513865No Hit
AGGGCACCACCAGGAGTGGAGCCTGCGGCTTCTGTAGGCACCATCAATAG4072190.334393266185667No Hit
TGAATGCATTGGATGGATGCCCGGGCATTGAGCTGTAGGCACCATCAATA3962010.32534568980334283No Hit
TCGAGGGCACGTCTGCCTGGGTGTCACACTGTAGGCACCATCAATAGATC3932200.3228978022379309No Hit
ACCTCCCGGGAAGTCCTCGTGTTGCATCCCTCTGTAGGCACCATCAATAG3740470.3071536397784735No Hit
ATGTACACGGAGTCAAGACCCGCAACGCGACTGTAGGCACCATCAATAGA3270200.2685367969275423No Hit
AGACCCGGGTTCGTTTCCCGGCTGGTGCACCACTGTAGGCACCATCAATA3042690.24985451245901277No Hit
AGCTCTCTGGGTCCCTACCGACGCTGCTGTAGGCACCATCAATAGATCGG2945780.24189661967256296No Hit
TTTTGATCCTTCGATGTCGGCTCTTCCTACTGTAGGCACCATCAATAGAT2927040.24035775979413895No Hit
AAGTTCCCTGGAAAGGGGCGCCCTGTAGGCACCATCAATAGATCGGAAGA2841770.23335570099834316No Hit
TCGGGAAGAGCCCAGCTTGAAAATCGGACGCTGTAGGCACCATCAATAGA2831260.23249265845179906No Hit
TGTCGATGGCCCGAGGTAGAGCACTCAATGGGCTCTGTAGGCACCATCAA2731130.22427035110779725No Hit
ATGGCCGTTTAGGCCAAGGAAGTTTGAGGCCTGTAGGCACCATCAATAGA2670470.21928917500186343No Hit
AGCGCGCGACCTATACCCGGCCGTCGGGGCCTGTAGGCACCATCAATAGA2566080.2107170521251996No Hit
TAGGTGCGTGCCGCACTCACGAGGGACTGCCACTGTAGGCACCATCAATA2520770.2069963615653601No Hit
TGCGCCCCCGGCGGCCCTTGAAAATCCGGAGGACCGACTGTAGGCACCAT2471600.20295870200174715No Hit
TAGGGCACCACCAGGAGTGGAGCCTGCGGCTTCTGTAGGCACCATCAATA2431980.19970525331534594No Hit
ACCGGGACGTGGCGGTTGACGGCAACGTTCTGTAGGCACCATCAATAGAT2379030.19535719405373705No Hit
TCTGATGATTCATGATAACTCGACGGATCGCCTGTAGGCACCATCAATAG2358130.1936409629193154No Hit
AGGTGCGTGCCGCACTCACGAGGGACTGCCCTGTAGGCACCATCAATAGA2351600.1931047433352114No Hit
TGAATGCATTGGATGGATGCCCGGGCATTGACTGTAGGCACCATCAATAG2312280.18987592954547655No Hit
TTTGATCCTTCGATGTCGGCTCTTCCTACTGTAGGCACCATCAATAGATC2217330.18207898475058015No Hit
TCGATGGTAGGATAGTGGCCTACCATGGTGGTCTGTAGGCACCATCAATA2090960.17170194511149586No Hit
AAAAGCCAGAGGAAACTCTGGTGGAAGCCCGCAGCGATCTGTAGGCACCA1983000.16283666696450255No Hit
TTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCCCTGTAGGCACCATC1970360.16179871665162748No Hit
AAAACGATGCCGACCAGGGATCAGCGGATGCTGTAGGCACCATCAATAGA1947070.15988622750709733No Hit
TGTCGATGGCCCGAGGTAGAGCACTCAATGGGCTACTGTAGGCACCATCA1940580.1593532925758822No Hit
AAATGCATTGGATGGATGCCCGGGCATTGAGACTGTAGGCACCATCAATA1914760.1572330491361326No Hit
TGTCGTTGTAGTATAGTGGTAAGTATTCCCGCCTGTAGGCACCATCAATA1886420.15490587256438573No Hit
GCCTAAGATCAGGCCGAAAGGCGTAGTCGATGGACTGTAGGCACCATCAA1873450.15384082386517767No Hit
AAAAAGCCAGTGGCGCGAAGCTACCGTGCGCTGGCTGTAGGCACCATCAA1871650.15369301448517966No Hit
TCGGCTCAGCCGGAGGTAGGGTCCAGCGGCTGGCTGTAGGCACCATCAAT1856640.15246044848864046No Hit
GGGGCGCTTGAGAGAACCATGTCGAAGGAACTGTAGGCACCATCAATAGA1813910.14895161804013154No Hit
CGAGGGCACGTCTGCCTGGGTGTCACACTGTAGGCACCATCAATAGATCG1782560.1463772713384991No Hit
AGGGCACCACCAGGAGTGGAGCCTGCGGCTCTGTAGGCACCATCAATAGA1771380.14545921085606683No Hit
GCGCCCCCGGCGGCCCTTGAAAATCCGGAGGACCGACTGTAGGCACCATC1756460.14423403532852758No Hit
CCCCAGTAAAACGCGGCGTGTTCGAATTCTGTAGGCACCATCAATAGATC1652300.1356807992059746No Hit
TTGGGTTGGGCCAACCTATGGTGTACCGGTCTGTAGGCACCATCAATAGA1635740.13432095290999266No Hit
TTGCGCCCCCGGCGGCCCTTGAAAATCCGGAGGACCGACTGTAGGCACCA1606940.1319560028300241No Hit
CCTAAGATCAGGCCGAAAGGCGTAGTCGATGGACTGTAGGCACCATCAAT1593310.13083675735815006No Hit
ACCTAGGGCGCGAGCCCGGGCGGAGCGGCCGTCGGCTGTAGGCACCATCA1543920.12678103220364842No Hit
TTGGGTTGGGCCAACCTATGGTGTACCGGTTCTGTAGGCACCATCAATAG1533830.1259524785124372No Hit
TTGCAGTTAAAAAGCTCGTAGTTGAACCTTGCTGTAGGCACCATCAATAG1529580.12560348414299738No Hit
TCGACCCCAGGTCAGGCGGGATTACCCGCTGAGCTGTAGGCACCATCAAT1488030.1221915509547094No Hit
AAAACGATGGATACTAGGCGCTGTGCGCTGTAGGCACCATCAATAGATCG1451770.1192140131109712No Hit
TCAGAGAGGGTGAGAGCCCCGTCGTGCCCGGCTGTAGGCACCATCAATAG1450520.11911136770819479No Hit
AAAGTCAGAATCCGGGCTAGAAGCGACGCATCTGTAGGCACCATCAATAG1435330.1178640207736558No Hit
AAAAGATGAAAAGGACTTTGAAAAGAGAGCTGTAGGCACCATCAATAGAT1421800.1167529869340039No Hit
TTGGCGCTTAAGCGCGCGACCTATACCCGGCCTGTAGGCACCATCAATAG1407220.11555573095601981No Hit
TCGGGGCTAAGCGATCTGCCGAAGCTGTGGGCTGTAGGCACCATCAATAG1395620.1146031816182547No Hit
AAATGCATTGGATGGATGCCCGGGCATTGAGCTGTAGGCACCATCAATAG1381620.11345355310715888No Hit
TAGGTGCGTGCCGCACTCACGAGGGACTGCCCTGTAGGCACCATCAATAG1380900.11339442935515964No Hit
AGAGAGGGTGAGAGCCCCGTCGTGCCCGGACCCTCTGTAGGCACCATCAA1369180.11243202605872801No Hit
TTTTGATCCTTCGATGTCGGCTCTTCCTATCTGTAGGCACCATCAATAGA1366910.11224562200728604No Hit
TCCGATGTCGTCCAGCGGTTAGGATATCTGGCTGTAGGCACCATCAATAG1332900.10945284588854537No Hit
TAGGGCACCACCAGGAGTGGAGCCTGCGGCTCTGTAGGCACCATCAATAG1328360.10908003778566143No Hit
TTTGATCCTTCGATGTCGGCTCTTCCTATCTGTAGGCACCATCAATAGAT1328020.10905211823610625No Hit
TAAGTCAGAATCCGGGCTAGAAGCGACGCATCTGTAGGCACCATCAATAG1307520.10736873363057307No Hit
TGTCGATGGCCCGAGGTAGAGCACTCAATGGGCCTGTAGGCACCATCAAT1306970.10732356965335145No Hit
TGAGGGCACGTCTGCCTGGGTGTCACACTGTAGGCACCATCAATAGATCG1259110.10339348247184812No Hit
ATGGTAGGATAGTGGCCTACCATGGTGGTCTGTAGGCACCATCAATAGAT1251960.10280635076796703No Hit
TCCGCCCGAGGAGGGGCTCGCGTCTGATTCTGTAGGCACCATCAATAGAT1246950.10239494799363917No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)