FastQCFastQC Report
Thu 7 Sept 2023
SRR12343694_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR12343694_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences197789250
Total Bases23.4 Gbp
Sequences flagged as poor quality0
Sequence length72-122
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCCAGTAAAACGCGGCGTGTTCGAATTCTGTAGGCACCATCAATAGATC16775170.8481335562979283No Hit
AGGTGCGTGCCGCACTCACGAGGGACTGCCACTGTAGGCACCATCAATAG15050050.7609134470149415No Hit
TCAGGGCTCAAGTGATTCACCGAAGCGACGAGACCTGTAGGCACCATCAA10456220.5286546159611809No Hit
TGTCGATGGCCCGAGGTAGAGCACTCAATGGGCTCTGTAGGCACCATCAA9887060.49987853232670637No Hit
AAAAGCCAGTGGCGCGAAGCTACCGTGCGCTGGCTGTAGGCACCATCAAT9001490.4551051182003067No Hit
TAGGTGCGTGCCGCACTCACGAGGGACTGCCACTGTAGGCACCATCAATA8629630.4363042986411041No Hit
TCTAAGTCAGAATCCGGGCTAGAAGCGACGCATCTGTAGGCACCATCAAT8168210.4129754271276118No Hit
AGCTCTCTGGGTCCCTACCGACGCTGCTGTAGGCACCATCAATAGATCGG7745480.3916026781030819No Hit
AAAAAGCCAGTGGCGCGAAGCTACCGTGCGCTGGCTGTAGGCACCATCAA7605960.38454870525066454No Hit
CCCCAGTAAAACGCGGCGTGTTCGAATTCTGTAGGCACCATCAATAGATC7181420.3630844446803858No Hit
GGGGCGCTTGAGAGAACCATGTCGAAGGAACTGTAGGCACCATCAATAGA6646030.336015733918805No Hit
TGTCGATGGCCCGAGGTAGAGCACTCAATGGGCTACTGTAGGCACCATCA6348240.32095980949419645No Hit
AGGTGCGTGCCGCACTCACGAGGGACTGCCCTGTAGGCACCATCAATAGA5828790.29469700704158597No Hit
ATGTACACGGAGTCGACCCGCAACGCGACTGTAGGCACCATCAATAGATC5536510.27991966196342827No Hit
TGAATGCATTGGATGGATGCCCGGGCATTGAGACTGTAGGCACCATCAAT4925960.24905094690434387No Hit
TCTGATGATTCATGATAACTCGACGGATCGCCTGTAGGCACCATCAATAG4491480.22708413121542248No Hit
TTGGGTTGGGCCAACCTATGGTGTACCGGTCTGTAGGCACCATCAATAGA4454990.22523923822958025No Hit
ATGTACACGGAGTCGAGCTCAACCCGCAACGCGACTGTAGGCACCATCAA4391780.22204341236947914No Hit
AAAAGCCCGATCCAGCAATATCGCGTGAGTGACTGTAGGCACCATCAATA4330340.21893707570052467No Hit
TGTCGATGGCCCGAGGTAGAGCACTCAATGGGCCTGTAGGCACCATCAAT4217700.21324212514077487No Hit
TGAAGGTCACGGCGAGACGAGCCGTTTACTGTAGGCACCATCAATAGATC4198930.21229313524370003No Hit
AAAAGCCCGATCCAGCAATATCGCGTGAGTGAACTGTAGGCACCATCAAT3999270.20219855224689917No Hit
TGCATTTATTAGACTGATGATTCATGATAACTCCTGTAGGCACCATCAAT3880360.196186597603257No Hit
TGAATGCATTGGATGGATGCCCGGGCATTGAGCTGTAGGCACCATCAATA3688340.18647828433547323No Hit
ATGTACACGGAGTCAAGACCCGCAACGCGACTGTAGGCACCATCAATAGA3574730.18073429167662045No Hit
TGCGCCCCCGGCGGCCCTTGAAAATCCGGAGGACCGACTGTAGGCACCAT3566120.18029897984850038No Hit
AGTAGCATGGGGCACGTGGAATCCCGTGTGACTGTAGGCACCATCAATAG3547250.1793449340649201No Hit
TAGGTGCGTGCCGCACTCACGAGGGACTGCCCTGTAGGCACCATCAATAG3429040.17336837062681618No Hit
TTGGGTTGGGCCAACCTATGGTGTACCGGTTCTGTAGGCACCATCAATAG3403610.17208265868847777No Hit
CCTAAGATCAGGCCGAAAGGCGTAGTCGATGGACTGTAGGCACCATCAAT3317140.16771083362720673No Hit
AAGTGGGAGCTTCGGCGCAAGTGAAATACCACTACTGTAGGCACCATCAA3230450.1633278856156237No Hit
TCGGCTCAGCCGGAGGTAGGGTCCAGCGGCTGGCTGTAGGCACCATCAAT3081640.1558042209068491No Hit
TTGCAGTTAAAAAGCTCGTAGTTGAACCTTGCTGTAGGCACCATCAATAG2927530.1480125942132851No Hit
TCAGGGCTCAAGTGATTCACCGAAGCGACGAGACTGTAGGCACCATCAAT2903120.14677845231730238No Hit
TGCATTTATTAGCTGATGATTCATGATAACTCCTGTAGGCACCATCAATA2893850.14630977163824627No Hit
GGTGCGTGCCGCACTCACGAGGGACTGCCACTGTAGGCACCATCAATAGA2857020.14444768863828547No Hit
GGGCGCTTGAGAGAACCATGTCGAAGGAACTGTAGGCACCATCAATAGAT2832160.14319079525302816No Hit
TTGTCGATGGCCCGAGGTAGAGCACTCAATGGGCTCTGTAGGCACCATCA2825820.142870252048582No Hit
GTGCGTGCCGCACTCACGAGGGACTGCCACTGTAGGCACCATCAATAGAT2820080.1425800441631686No Hit
TAGGGGCGCCAGAGAGGGTGAGAGCCCCGTCGTGCCCGGCTGTAGGCACC2663950.13468628856219436No Hit
TTGCGCCCCCGGCGGCCCTTGAAAATCCGGAGGACCGACTGTAGGCACCA2644590.13370746893473737No Hit
GCCTAAGATCAGGCCGAAAGGCGTAGTCGATGGACTGTAGGCACCATCAA2573080.1300920044946831No Hit
TGAATGCATTGGATGGATGCCCGGGCATTGACTGTAGGCACCATCAATAG2534910.12816217261554913No Hit
GCATTTATTAGACTGATGATTCATGATAACTCCTGTAGGCACCATCAATA2410840.12188933422822525No Hit
TCGCATTTATTAGACTGATGATTCATGATAACTCGCTGTAGGCACCATCA2406380.12166384169008174No Hit
TCGAGTAGCATGGGGCACGTGGAATCCCGTGTGAATCTGTAGGCACCATC2365570.11960053440720363No Hit
ACGAAACTTGCCCCGAGATGAGTTCTCCCCTGTAGGCACCATCAATAGAT2322500.11742296408930213No Hit
TAGCTCTCTGGGTCCCTACCGACGCTGCTGTAGGCACCATCAATAGATCG2316710.11713022826063602No Hit
GGGGCATTTGGTCTAGTGGTATGATTCTCGCTTCTGTAGGCACCATCAAT2289850.11577221714526953No Hit
TCGATGGCCCGAGGTAGAGCACTCAATGGGCTCTGTAGGCACCATCAATA2266230.11457801675267994No Hit
TCCCAGTAAAACGCGGCGTGTTCGAATTCCTGTAGGCACCATCAATAGAT2219770.11222905188224336No Hit
CCTAAGATCAGGCCGAAAGGCGTAGTCGATGGCTGTAGGCACCATCAATA2162000.10930826624803926No Hit
TCCGATGTCGTCCAGCGGTTAGGATATCTGGCTGTAGGCACCATCAATAG2159270.10917024054644023No Hit
TGTCGTTGTAGTATAGTGGTAAGTATTCCCGCCTGTAGGCACCATCAATA2146120.10850539147097225No Hit
TCATCGCGCTTGGTTGAAAAGCCAGTGGCGCGAAGCCTGTAGGCACCATC2137810.10808524730236856No Hit
TAAGTGGGAGCTTCGGCGCAAGTGAAATACCACTACTGTAGGCACCATCA2133790.10788200066484907No Hit
TCGCGCTTGGTTGAAAAGCCAGTGGCGCGAAGCCTGTAGGCACCATCAAT2095910.10596683085658093No Hit
AGGTGCGTGCCGCACTCACGAGGGACTGCCAGCTGTAGGCACCATCAATA2077270.10502441361196324No Hit
TCGGGGCTAAGCGATCTGCCGAAGCTGTGGGCTGTAGGCACCATCAATAG2013270.101788646248469No Hit
GGGGGCGCCAGAGAGGGTGAGAGCCCCGTCGTGCCCGGCTGTAGGCACCA2007770.10151057249066872No Hit
AAATGCATTGGATGGATGCCCGGGCATTGAGACTGTAGGCACCATCAATA2001150.10117587280400729No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)