FastQCFastQC Report
Sat 2 Sept 2023
SRR12343699_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR12343699_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31760086
Total Bases2.2 Gbp
Sequences flagged as poor quality0
Sequence length72
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACGCTATTGGAGCTGGAATTACCGCGGCTGTAGGCACCATCAATAGATCG21048946.627482054047334No Hit
ATTGGAGCTGGAATTACCGCGGCTGTAGGCACCATCAATAGATCGGAAGA8786872.7666392339113943No Hit
TATACGCTATTGGAGCTGGAATTACCGCGGCTGTAGGCACCATCAATAGA7756342.442165931162781No Hit
GGGCGCTTGAGAGAACTCGGGTGAAGGAACTGTAGGCACCATCAATAGAT6154451.9377938712130691No Hit
TGGCGCTTGAGAGAACTCGGGTGAAGGAACTGTAGGCACCATCAATAGAT4609431.4513279340616394No Hit
AAAACTCAGCGGGTAATCCCGCCTGACCTGTAGGCACCATCAATAGATCG4203051.3233748800302365No Hit
AAAAATATACGCTATTGGAGCTGGAATTACCGCGGCTGTAGGCACCATCA3640701.1463130169105966No Hit
TACGCTATTGGAGCTGGAATTACCGCGGCTGTAGGCACCATCAATAGATC2702310.8508509706176488No Hit
AGACGAACGATTTGCACGTCAGTATCGCTGTAGGCACCATCAATAGATCG2689520.8468239034365336No Hit
AAAACAGAAAAGATAACTCTTCCTGAGGCACCATCAATAGATCGGAAGAG2658670.837110453668167No Hit
TATTGGAGCTGGAATTACCGCGGCTGTAGGCACCATCAATAGATCGGAAG2586780.8144751245320936No Hit
TAGGACGGAGCACGAGAAACTTTGTCTGACTGTAGGCACCATCAATAGAT2110810.6646109207638796No Hit
AAAAACTCAGCGGGTAATCCCGCCTGACCTGTAGGCACCATCAATAGATC1991120.6269252545474845No Hit
AGGCGCTTGAGAGAACTCGGGTGAAGGAACTGTAGGCACCATCAATAGAT1776450.559334127747639No Hit
ATATACGCTATTGGAGCTGGAATTACCGCGGCTGTAGGCACCATCAATAG1692700.5329645517962388No Hit
AAATTTCTTCAAAGTAACAGCGCTGTAGGCACCATCAATAGATCGGAAGA1654540.5209494709806516No Hit
ATACGCTATTGGAGCTGGAATTACCGCGGCTGTAGGCACCATCAATAGAT1645450.5180873880505236No Hit
AGAAATCACATTGCGTTAGCATCTGTAGGCACCATCAATAGATCGGAAGA1582210.49817560317689313No Hit
TAGAAATCACATTGCGTTAGCATCTGTAGGCACCATCAATAGATCGGAAG1468450.4623570603681615No Hit
GATACGCTATTGGAGCTGGAATTACCGCGGCTGTAGGCACCATCAATAGA1401950.4414188299112288No Hit
TAGGACGGAGCACGAGAAACTTTGTCTGCTGTAGGCACCATCAATAGATC1325720.41741700573480817No Hit
CATACGCTATTGGAGCTGGAATTACCGCGGCTGTAGGCACCATCAATAGA1313410.4135410716457128No Hit
TTGGCGCTTGAGAGAACTCGGGTGAAGGAACTGTAGGCACCATCAATAGA1272890.40078291979436076No Hit
ACTTGGCTACCCAGCGTTTACTGTAGGCACCATCAATAGATCGGAAGAGC1149280.36186299999313604No Hit
GGGCGCTTGAGAGAACTCGGGTGAAGGACTGTAGGCACCATCAATAGATC1118480.3521652932551883No Hit
TGCTTGAGAGAACTCGGGTGAAGGAACTGTAGGCACCATCAATAGATCGG1078380.3395393828593537No Hit
AAAATATACGCTATTGGAGCTGGAATTACCGCGGCTGTAGGCACCATCAA1069960.3368882565368368No Hit
ACTCGGCTCTCACCCGAGAGACCCGGGTCTGTAGGCACCATCAATAGATC1014790.3195173967727921No Hit
AGCGGGTAATCCCGCCTGACCTGTAGGCACCATCAATAGATCGGAAGAGC915080.2881226455117281No Hit
TTGGAGCTGGAATTACCGCGGCTGTAGGCACCATCAATAGATCGGAAGAG878460.27659245003303834No Hit
TGCGCTTGAGAGAACTCGGGTGAAGGAACTGTAGGCACCATCAATAGATC875440.27564157099574604No Hit
ATTGCTTCTTCTCTGGGAAAAGAAGTTCAGGACCTGTAGGCACCATCAAT862810.2716648815119707No Hit
TAGGCGCTTGAGAGAACTCGGGTGAAGGAACTGTAGGCACCATCAATAGA832700.26218442859380164No Hit
TGGCGCTTGAGAGAACTCGGGTGAAGGACTGTAGGCACCATCAATAGATC810980.2553456561798983No Hit
TAGACGAACGATTTGCACGTCAGTATCGCTGTAGGCACCATCAATAGATC758690.23888159496797332No Hit
ACTGGGCAGAAATCACATTGCGTTAGCATCTGTAGGCACCATCAATAGAT745280.23465931420966557No Hit
GGCGCTTGAGAGAACTCGGGTGAAGGAACTGTAGGCACCATCAATAGATC731120.23020088799507657No Hit
TTATTGGAGCTGGAATTACCGCGGCTGTAGGCACCATCAATAGATCGGAA653100.2056354633296648No Hit
TAGAAACTGTCTACCTGAGACTGTCCCTTGGCCTGTAGGCACCATCAATA639620.20139114232877076No Hit
AAAGTTCCCTGGAAAGGGGCGCCCTGTAGGCACCATCAATAGATCGGAAG612640.19289620311481523No Hit
ATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTAGGCACCATCAATA604280.19026396842880083No Hit
CGCTATTGGAGCTGGAATTACCGCGGCTGTAGGCACCATCAATAGATCGG589410.1855819911822657No Hit
TTTGCCTCAAGATGAGATCTCACCTGTAGGCACCATCAATAGATCGGAAG576240.1814352769699679No Hit
CACGCTATTGGAGCTGGAATTACCGCGGCTGTAGGCACCATCAATAGATC548870.17281754211874617No Hit
AAAAACAGAAAAGATAACTCTTCCTGAGGCACCATCAATAGATCGGAAGA535090.16847876293533964No Hit
AGTGGAACGCTCTGGAAAGTGCGGCCCTGTAGGCACCATCAATAGATCGG520650.16393217575040572No Hit
ATCGCGCTTGGTTGAAAAGCCAGTGGCGCGAAGCCTGTAGGCACCATCAA510310.16067651705980898No Hit
AGAAACTGTCTACCTGAGACTGTCCCTTGGCCTGTAGGCACCATCAATAG498950.1570997005486698No Hit
AGAGCACTGGGCAGAAATCACATTGCGTTAGCATCTGTAGGCACCATCAA498710.15702413400265983No Hit
CATTGGAGCTGGAATTACCGCGGCTGTAGGCACCATCAATAGATCGGAAG490290.15437300768014292No Hit
AGCGCCGGAGGCACGACCCGGCCAATTAAGACCCCCCTGTAGGCACCATC485800.1529592835485395No Hit
GATTGGAGCTGGAATTACCGCGGCTGTAGGCACCATCAATAGATCGGAAG478040.1505159652275501No Hit
AATACGCTATTGGAGCTGGAATTACCGCGGCTGTAGGCACCATCAATAGA476280.1499618105568102No Hit
TATGTACACGGAGTCGACCCGCAACGCGACTGTAGGCACCATCAATAGAT470890.14826471187766935No Hit
AGGCGCTTGAGAGAACTCGGGTGAAGGACTGTAGGCACCATCAATAGATC444260.13987997387664505No Hit
AGCATGGGGCACGTGGAATCCCGTGTGACTGTAGGCACCATCAATAGATC437730.13782393410395677No Hit
GACGCTATTGGAGCTGGAATTACCGCGGCTGTAGGCACCATCAATAGATC432990.1363314948202596No Hit
AATTGGAGCTGGAATTACCGCGGCTGTAGGCACCATCAATAGATCGGAAG432370.13613628124306718No Hit
AAAACAGAAAAGATAACTCTTCCCGAGGCCCCCTGTAGGCACCATCAATA422940.1331671457060916No Hit
AAAACTCAGCGGGTAATCCCGCCTGACCTGAGGCACCATCAATAGATCGG421310.13265392291444048No Hit
AAGTCAGACGAACGATTTGCACGTCAGTATCGCTGTAGGCACCATCAATA403480.12703995826711553No Hit
GCGCTTGAGAGAACTCGGGTGAAGGAACTGTAGGCACCATCAATAGATCG398700.12553492455908338No Hit
AGAAAAGATAACTCTTCCCGAGGCCCCCTGTAGGCACCATCAATAGATCG397240.125075228070856No Hit
AGGCTGTTAAACAGAAAAGATAACTCTTCCTGAGGCACCATCAATAGATC375320.11817348353527757No Hit
ACTCCGCAAGTAGTGGCGAGCGAACGCGGACCTGTAGGCACCATCAATAG364250.11468797660056713No Hit
TTTGAGAGAACTCGGGTGAAGGAACTGTAGGCACCATCAATAGATCGGAA358690.11293735161800256No Hit
TATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTAGGCACCATCAAT350550.11037438626583064No Hit
ATCCGCTCCGCACTTGGCTACCCAGCGTTTACTGTAGGCACCATCAATAG348780.10981708298900701No Hit
AGGACGGAGCACGAGAAACTTTGTCTGACTGTAGGCACCATCAATAGATC348010.10957464032055832No Hit
TAGAAAAGATAACTCTTCCCGAGGCCCCCTGTAGGCACCATCAATAGATC343930.10829000903838863No Hit
TTGCGCTTGAGAGAACTCGGGTGAAGGAACTGTAGGCACCATCAATAGAT335350.10558850501853176No Hit
CGGCGCTTGAGAGAACTCGGGTGAAGGAACTGTAGGCACCATCAATAGAT331530.10438573749453953No Hit
ACATTGCGTTAGCATCTGTAGGCACCATCAATAGATCGGAAGAGCACACG331300.1043133195546133No Hit
AAATCGACCAACACCCTTTGTGGGTTCTAGGTTAGCGCGCTGTAGGCACC329020.10359543736751847No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)