FastQCFastQC Report
Sat 2 Sept 2023
SRR12415946_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR12415946_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences53044980
Total Bases3.9 Gbp
Sequences flagged as poor quality0
Sequence length75
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGCTAAGCAGGGTCGGGCCTGGTTAGTACTAACTGTAGGCACCATC1144450.21575085898797586No Hit
CGGAAGCTAAGCAGGGTCGGGCCTGGTTAGTAAACTGTAGGCACCATCAA774170.1459459500220379No Hit
CGGAAGCTAAGCAGGGTCGGGCCTGGTTAGTAACTGTAGGCACCATCAAT698750.13172782796788687No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAACTGTAGGCACCATCAAT676200.12747671881486242No Hit
GGTTTCTCTTCAGATCGTATAAATCTTTCGCAACTGTAGGCACCATCAAT674560.127167547240097No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)