FastQCFastQC Report
Wed 30 Aug 2023
SRR12432001.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR12432001.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences56850114
Total Bases2.8 Gbp
Sequences flagged as poor quality0
Sequence length50
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGCCGCCTGGATACCGCAGCTAGGAATAATGGAATAAAAAAAAAAAAA3618520.636501801913713No Hit
CCGCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCAAAAAAAAAAAAAAA2521670.44356463383697No Hit
CCGGCCGCCTGGATACCGCAGCTAGGAATAATGGAATAAAAAAAAAAAAA2326300.4091988276399938No Hit
CCCCTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACAAAAAAAAAAA2098450.36911975233682026No Hit
GCGGCCGCCTGGATACCGCAGCTAGGAATAATGGAATAAAAAAAAAAAAA1790800.31500376586755835No Hit
GGGCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCAAAAAAAAAAAAAAA1766060.31065197160378605No Hit
GCGCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCAAAAAAAAAAAAAAA1601360.28168105344520505No Hit
GCCGCCGCCTGGATACCGCAGCTAGGAATAATGGAATAAAAAAAAAAAAA1590560.27978132110693743No Hit
CCGCTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACAAAAAAAAAAA1572210.27655353514330683No Hit
CGGCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCAAAAAAAAAAAAAAA1535110.2700276027590728No Hit
CCCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAAAAG1430220.25157733192936077No Hit
CGGGCCGCCTGGATACCGCAGCTAGGAATAATGGAATAAAAAAAAAAAAA1425890.25081567998262944No Hit
CCCGCCGCCTGGATACCGCAGCTAGGAATAATGGAATAAAAAAAAAAAAA1352560.2379168492080772No Hit
CGCCTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACAAAAAAAAAAA1316650.23160023918333744No Hit
CCCCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAAAAAAAG1258720.2214102860022409No Hit
CGCCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAAAAAAAG1136740.19995386464836287No Hit
CCGCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAAAAAAAG1132420.19919397171305583No Hit
CCCCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCAAAAAAAAAAAAAAA1085630.19096355725865388No Hit
CCCCTCGCTTCTGGCGCCAAGCGTCCGAAAAAAAAAAAAAAAGATCGGAA1081140.19017376112913337No Hit
CCGCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAAAAG1071190.1884235447619331No Hit
GGGCTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACAAAAAAAAAAA1060720.18658185980066813No Hit
GCCCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAAAAAAAG1044200.18367597292768842No Hit
CGGGGGGGGATGCGTGCATTTATCAGAAAAAAAAAAAAAAAGATCGGAAG1033730.18183428796642342No Hit
CGCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAAAAG1009870.17763728670799148No Hit
GGCCTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACAAAAAAAAAAA1005230.17682110540710613No Hit
GGCCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAAAAAAAG987200.17364960780905384No Hit
GGGGGGCCGCCGGTGAAATACCACTACTCTCAAAAAAAAAAAAAAAGATC975060.17151416793992708No Hit
GCCCTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACAAAAAAAAAAA957760.16847107817585028No Hit
CGGCTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACAAAAAAAAAAA956270.1682089854736263No Hit
CGGGGGGGTGGGGGCCGGGCCGCAAAAAAAAAAAAAAAGATCGGAAGAGC951680.16740159922986259No Hit
GCGCTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACAAAAAAAAAAA948250.16679825831132017No Hit
GGGGGGCCGCCGGTGAAATACCACTACTCTCATAAAAAAAAAAAAAAAGA923240.16239897073909124No Hit
CGCCTCGCTTCTGGCGCCAAGCGTCCGAAAAAAAAAAAAAAAGATCGGAA910810.16021251953865914No Hit
GCGCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAAAAG887370.1560893967600487No Hit
GGGCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAAAAAAAG871980.1533822781780174No Hit
GCGCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAAAAAAAG868700.1528053224308398No Hit
GCCCTCGCTTCTGGCGCCAAGCGTCCGAAAAAAAAAAAAAAAGATCGGAA858520.15101464880088014No Hit
CGCCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCAAAAAAAAAAAAAAA849030.1493453469591987No Hit
CCCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAAAAA847820.14913250657685576No Hit
GGCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAAAAG844300.14851333455549448No Hit
CGCGCCGCCTGGATACCGCAGCTAGGAATAATGGAATAAAAAAAAAAAAA838170.14743506055238517No Hit
GGGCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAAAAG827120.1454913529285095No Hit
GCCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAAAAG815210.14339637032214217No Hit
CCGCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCAAAAAAAAAAAAAAAG811300.14270859685523235No Hit
CCGCTCGCTTCTGGCGCCAAGCGTCCGAAAAAAAAAAAAAAAGATCGGAA808650.14224245882778705No Hit
GGCGCCGCCTGGATACCGCAGCTAGGAATAATGGAATAAAAAAAAAAAAA793630.13960042366845563No Hit
GGCCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCAAAAAAAAAAAAAAA771320.13567606918079353No Hit
GGCCTCGCTTCTGGCGCCAAGCGTCCGAAAAAAAAAAAAAAAGATCGGAA767080.13493024833688108No Hit
GCCCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCAAAAAAAAAAAAAAA764390.13445707426373849No Hit
CGGGGGGGTGGGGGCCGGGCCGCCCCTCCCACGGCGCGACCGCTCTAAAA738170.1298449463091666No Hit
CGGCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAAAAAAAG728380.1281228741247555No Hit
CGGCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAAAAG721250.12686869897921402No Hit
CGCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAAAAAAAGA670090.1178695965323834No Hit
CCGCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAAAAA664960.11696722367170627No Hit
CGGCCGCCTGGATACCGCAGCTAGGAATAATGGAATAAAAAAAAAAAAAA664000.11679835857497138No Hit
GGGGGGGAAGGTGGCTCGGGGGGAAAAAAAAAAAAAAAGATCGGAAGAGC644810.11342281565169772No Hit
CCGGGGGGGGATGCGTGCATTTATCAGAAAAAAAAAAAAAAAGATCGGAA639530.11249405761965578No Hit
CCCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAAAAAAAGA635480.11178165799280544No Hit
GGGCTCGCTTCTGGCGCCAAGCGTCCGAAAAAAAAAAAAAAAGATCGGAA624690.10988368466596216No Hit
CGCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAAAAA604020.10624780805188885No Hit
GCGCTCGCTTCTGGCGCCAAGCGTCCGAAAAAAAAAAAAAAAGATCGGAA593410.10438149693068337No Hit
CCGCCGCCTGGATACCGCAGCTAGGAATAATGGAATAAAAAAAAAAAAAA584910.10288633722000978No Hit
CCGCGCTGCGATCTATTGAAAGTCAGCCCTCGACACAAAAAAAAAAAAAA576270.10136655134939572No Hit
CCGGGGCCGCCGGTGAAATACCACTACTCTCAAAAAAAAAAAAAAAGATC574630.10107807347580693No Hit
CGGGGGGTGGGGGCCGGGCCGCAAAAAAAAAAAAAAAGATCGGAAGAGCA570810.10040613111171597No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)