FastQCFastQC Report
Sat 26 Aug 2023
SRR12432002.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR12432002.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences118303293
Total Bases5.9 Gbp
Sequences flagged as poor quality0
Sequence length50
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGCCGCCGGTGAAATACCACTACTCTCAAAAAAAAAAAAAAAGATC4106500.34711628863957317No Hit
GGGATGTTAGGGATAACAGGGTAATGCGAAAAAAAAAAAAAAAGATCGGA2949180.2492897640643021No Hit
CGGATGTTAGGGATAACAGGGTAATGCGAAAAAAAAAAAAAAAGATCGGA2650110.22400982532244473No Hit
GGGATGTTAGGGATAACAGGGTAATGCAAAAAAAAAAAAAAAGATCGGAA2621390.22158216677873876No Hit
CCCCTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACAAAAAAAAAAA2587690.21873355630092225No Hit
CGGATGTTAGGGATAACAGGGTAATGCAAAAAAAAAAAAAAAGATCGGAA2321100.19619910326587445No Hit
CCGATGTTAGGGATAACAGGGTAATGCGAAAAAAAAAAAAAAAGATCGGA2269060.19180024008291977No Hit
CCCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAAAAG2222550.18786881950952963No Hit
GGGGCCGCCTGGATACCGCAGCTAGGAATAATGGAATAAAAAAAAAAAAA2180020.18427382236942466No Hit
CCGGGGCCGCCGGTGAAATACCACTACTCTCAAAAAAAAAAAAAAAGATC2071920.17513629143019713No Hit
CCGCGCGCCGGGCCGTACCCATATCCGCAGCAAAAAAAAAAAAAAAGATC2067540.17476605659658181No Hit
CCGATGTTAGGGATAACAGGGTAATGCAAAAAAAAAAAAAAAGATCGGAA2021310.1708583040034228No Hit
CGGGGGGGTGGGGGCCGGGCCGCCCCTCCCACGGCGCGACCGCTCTAAAA1983190.16763607755195792No Hit
GCGATGTTAGGGATAACAGGGTAATGCGAAAAAAAAAAAAAAAGATCGGA1915210.1618898300658461No Hit
GCGGGGCCGCCGGTGAAATACCACTACTCTCAAAAAAAAAAAAAAAGATC1838760.155427626177743No Hit
CCCCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAAAAAAAG1827150.15444625028315992No Hit
CCGCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCAAAAAAAAAAAAAAA1795690.15178698364719231No Hit
CGCCTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACAAAAAAAAAAA1775090.15004569653018873No Hit
CGCCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAAAAAAAG1727230.1460001624806843No Hit
GCGATGTTAGGGATAACAGGGTAATGCAAAAAAAAAAAAAAAGATCGGAA1722570.14560625966683785No Hit
CGCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAAAAG1684500.14238825964041424No Hit
CGGGGGCCGCCGGTGAAATACCACTACTCTCAAAAAAAAAAAAAAAGATC1650950.1395523284377215No Hit
GCCCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAAAAAAAG1613550.13639096250685093No Hit
GCGCGCGCCGGGCCGTACCCATATCCGCAGCAAAAAAAAAAAAAAAGATC1605550.1357147345002476No Hit
CCGCGCTGCGATCTATTGAAAGTCAGCCCTCGACACAAAAAAAAAAAAAA1565860.13235979830248681No Hit
GGGCGCTGCGATCTATTGAAAGTCAGCCCTCGACACAAAAAAAAAAAAAA1554900.13143336593344024No Hit
CCGGGGGGGGATGCGTGCATTTATCAGAAAAAAAAAAAAAAAGATCGGAA1542050.13034717469783363No Hit
CCCCCCGCGGACGCTACGCCGCGACGAGTAAAAAAAAAAAAAAAGATCGG1525930.12898457526452792No Hit
GGCCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAAAAAAAG1484700.125499465175496No Hit
CGGGGGGGGATGCGTGCATTTATCAGAAAAAAAAAAAAAAAGATCGGAAG1444080.12206591747196759No Hit
CCGCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAAAAG1437450.12150549351149506No Hit
CGGGGGGGTGGGGGCCGGGCCGCCCCTCCCACGGCGCGACCGCTCAAAAA1386590.11720637395951439No Hit
GGGCGACGAAGCCGAGCGCACGGGGTCGGCGGCGAAAAAAAAAAAAAAAG1374480.11618273381451859No Hit
GCCCCCGCGGACGCTACGCCGCGACGAGTAAAAAAAAAAAAAAAGATCGG1367600.11560117772883972No Hit
CCGCGACGAAGCCGAGCGCACGGGGTCGGCGGCGAAAAAAAAAAAAAAAG1357940.11478463241086619No Hit
GGCCTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACAAAAAAAAAAA1355800.1146037414190998No Hit
CGGGGGGGTGGGGGCCGGGCCGCAAAAAAAAAAAAAAAGATCGGAAGAGC1336970.11301206974855722No Hit
GCCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAAAAG1325800.11206788639433732No Hit
GCGCGCTGCGATCTATTGAAAGTCAGCCCTCGACACAAAAAAAAAAAAAA1322640.11180077633172898No Hit
GCCCTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACAAAAAAAAAAA1320290.11160213435478926No Hit
CGGCGCTGCGATCTATTGAAAGTCAGCCCTCGACACAAAAAAAAAAAAAA1318320.11143561320816318No Hit
CCGCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAAAAAAAG1312490.110942812048351No Hit
GGGCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCAAAAAAAAAAAAAAA1302640.11011020631522066No Hit
GCCGCCGCCTGGATACCGCAGCTAGGAATAATGGAATAAAAAAAAAAAAA1264830.10691418369901165No Hit
CGCCCCGCGGACGCTACGCCGCGACGAGTAAAAAAAAAAAAAAAGATCGG1262850.10674681726737734No Hit
GGCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAAAAG1262190.10669102845683257No Hit
GCGCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCAAAAAAAAAAAAAAA1237780.10462768775168414No Hit
CCGGCCGCCTGGATACCGCAGCTAGGAATAATGGAATAAAAAAAAAAAAA1235170.1044070683645298No Hit
CGGCGACGAAGCCGAGCGCACGGGGTCGGCGGCGAAAAAAAAAAAAAAAG1223750.10344175288510354No Hit
CCGCTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACAAAAAAAAAAA1214080.10262436228212175No Hit
GCGCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAAAAG1212780.10251447523104873No Hit
CGGGGGGGGCCCAAGTCCTTCTGATCGAGGCCAAAAAAAAAAAAAAAGAT1184680.10013922435785452No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)