FastQCFastQC Report
Sat 26 Aug 2023
SRR12432005.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR12432005.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences83614266
Total Bases4.1 Gbp
Sequences flagged as poor quality0
Sequence length50
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCCCCGCGGACGCTACGCCGCGACGAGTAAAAAAAAAAAAAAAGATCGG3263650.390322149093553No Hit
GCCCCCGCGGACGCTACGCCGCGACGAGTAAAAAAAAAAAAAAAGATCGG2954980.35340619984632765No Hit
CGCCCCGCGGACGCTACGCCGCGACGAGTAAAAAAAAAAAAAAAGATCGG2746830.328512122560521No Hit
CCCCTCGCTTCTGGCGCCAAGCGTCCGAAAAAAAAAAAAAAAGATCGGAA2649270.3168442571749658No Hit
GGGGGGCCGCCGGTGAAATACCACTACTCTCAAAAAAAAAAAAAAAGATC2557140.3058258025012143No Hit
CGCCTCGCTTCTGGCGCCAAGCGTCCGAAAAAAAAAAAAAAAGATCGGAA2424640.28997922435867585No Hit
CGGGGGGGTGGGGGCCGGGCCGCAAAAAAAAAAAAAAAGATCGGAAGAGC2364980.28284407830596753No Hit
GGCCCCGCGGACGCTACGCCGCGACGAGTAAAAAAAAAAAAAAAGATCGG2294340.27439575921171155No Hit
GCCCTCGCTTCTGGCGCCAAGCGTCCGAAAAAAAAAAAAAAAGATCGGAA2268730.2713328847495952No Hit
CGGGGGGGGATGCGTGCATTTATCAGAAAAAAAAAAAAAAAGATCGGAAG2205910.26381981275778943No Hit
CCCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAAAAG2106590.25194145697577497No Hit
GGCCTCGCTTCTGGCGCCAAGCGTCCGAAAAAAAAAAAAAAAGATCGGAA1993350.2383983135126726No Hit
GCCCCCCGCGGACGCTACGCCGCGACGAGTAAAAAAAAAAAAAAAGATCG1989590.237948629483873No Hit
CCCCCCCGCGGACGCTACGCCGCGACGAGTAAAAAAAAAAAAAAAGATCG1966090.2351381043038756No Hit
CCCCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAAAAAAAG1865880.2231533073554697No Hit
CGCCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAAAAAAAG1776510.2124649398943477No Hit
GCCCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAAAAAAAG1643560.19656454318453268No Hit
CCGCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCAAAAAAAAAAAAAAA1630290.1949774934339554No Hit
CGCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAAAAG1612630.1928654136603914No Hit
GGGCGACGAAGCCGAGCGCACGGGGTCGGCGGCGAAAAAAAAAAAAAAAG1602960.1917089124480265No Hit
CCGCGACGAAGCCGAGCGCACGGGGTCGGCGGCGAAAAAAAAAAAAAAAG1601550.19154028093722666No Hit
GGCCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAAAAAAAG1538720.18402601297725915No Hit
CGGCGACGAAGCCGAGCGCACGGGGTCGGCGGCGAAAAAAAAAAAAAAAG1474920.17639573610560666No Hit
CCGCTCGCTTCTGGCGCCAAGCGTCCGAAAAAAAAAAAAAAAGATCGGAA1466980.17544613738521606No Hit
GCGCGACGAAGCCGAGCGCACGGGGTCGGCGGCGAAAAAAAAAAAAAAAG1377810.1647816892873281No Hit
CCGCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAAAAG1364820.16322812664527844No Hit
CCGCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAAAAAAAG1344410.1607871556272467No Hit
CCGGGGCCGCCGGTGAAATACCACTACTCTCAAAAAAAAAAAAAAAGATC1330830.15916303086365668No Hit
CGCGACGAAGCCGAGCGCACGGGGTCGGCGGCGAAAAAAAAAAAAAAAGA1316570.15745758026507103No Hit
GGGCTCGCTTCTGGCGCCAAGCGTCCGAAAAAAAAAAAAAAAGATCGGAA1299510.1554172585812091No Hit
GCCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAAAAG1286920.15391153466562751No Hit
GGGCGACGAAGCCGAGCGCACGGGGTCGGCGGCGATAAAAAAAAAAAAAA1280340.15312458761522826No Hit
CGCCCCCGCGGACGCTACGCCGCGACGAGTAAAAAAAAAAAAAAAGATCG1263040.15105556269548548No Hit
CCGGGGGGGGATGCGTGCATTTATCAGAAAAAAAAAAAAAAAGATCGGAA1258150.15047073426441368No Hit
CCGCGACGAAGCCGAGCGCACGGGGTCGGCGGCGATAAAAAAAAAAAAAA1253000.14985481066113765No Hit
GGGGGGCCGCCGGTGAAATACCACTACTCTCATAAAAAAAAAAAAAAAGA1227280.14677878054924265No Hit
GGCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAAAAG1216300.1454656075076949No Hit
GCGCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAAAAG1174090.14041742589715492No Hit
GGGCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCAAAAAAAAAAAAAAA1172600.14023922664106148No Hit
CGGCTCGCTTCTGGCGCCAAGCGTCCGAAAAAAAAAAAAAAAGATCGGAA1168940.1398015022938789No Hit
CGGCGACGAAGCCGAGCGCACGGGGTCGGCGGCGATAAAAAAAAAAAAAA1156210.1382790348240335No Hit
CGGGGGGGTGGGGGCCGGGCCGAAAAAAAAAAAAAAAGATCGGAAGAGCA1152990.13789393307596579No Hit
GCGGGGCCGCCGGTGAAATACCACTACTCTCAAAAAAAAAAAAAAAGATC1150490.1375949410355405No Hit
CCGCGCGCCGGGCCGTACCCATATCCGCAGCAAAAAAAAAAAAAAAGATC1136160.13588111865982297No Hit
GCGCTCGCTTCTGGCGCCAAGCGTCCGAAAAAAAAAAAAAAAGATCGGAA1135560.13580936057012089No Hit
GCGCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCAAAAAAAAAAAAAAA1120610.1340213881683779No Hit
CGGGGGGGGATGCGTGCATTTATCAAAAAAAAAAAAAAAGATCGGAAGAG1114960.1333456661570168No Hit
GCGCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAAAAAAAG1105980.1322716867478093No Hit
GGGCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAAAAAAAG1099360.1314799558247632No Hit
CCCCGACGAAGCCGAGCGCACGGGGTCGGCGGCGAAAAAAAAAAAAAAAG1092720.13068583296539374No Hit
GCGCGACGAAGCCGAGCGCACGGGGTCGGCGGCGATAAAAAAAAAAAAAA1083510.1295843462884671No Hit
CGGCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCAAAAAAAAAAAAAAA1079850.1291466219412845No Hit
CGGGGGCCGCCGGTGAAATACCACTACTCTCAAAAAAAAAAAAAAAGATC1051970.12581226270646206No Hit
GGGCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAAAAG1051070.125704625571909No Hit
GGCCCCCGCGGACGCTACGCCGCGACGAGTAAAAAAAAAAAAAAAGATCG1040220.12440700011646338No Hit
CGGCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAAAAG1037450.1240757169356722No Hit
CGGCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAAAAAAAG971830.11622777385859012No Hit
CGGGGGGTGGGGGCCGGGCCGCAAAAAAAAAAAAAAAGATCGGAAGAGCA956910.11444338936133218No Hit
CCCCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCAAAAAAAAAAAAAAA935340.11186368603654309No Hit
GGGGGGGCTCTCGCTTCTGGCGCCAAGCGTCCGAAAAAAAAAAAAAAAGA923130.11040340891110614No Hit
CGCGACGAAGCCGAGCGCACGGGGTCGGCGGCGATAAAAAAAAAAAAAAA913570.10926006334851998No Hit
CGGGGGGGGCCCAAGTCCTTCTGATCGAGGCCAAAAAAAAAAAAAAAGAT890250.1064710655954332No Hit
GGCGACGAAGCCGAGCGCACGGGGTCGGCGGCGAAAAAAAAAAAAAAAGA871440.10422144948327358No Hit
GCGCGCGCCGGGCCGTACCCATATCCGCAGCAAAAAAAAAAAAAAAGATC862280.10312594264715545No Hit
CCCCGACGAAGCCGAGCGCACGGGGTCGGCGGCGATAAAAAAAAAAAAAA851690.10185941236391406No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)