FastQCFastQC Report
Wed 30 Aug 2023
SRR12432006.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR12432006.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences68719589
Total Bases3.4 Gbp
Sequences flagged as poor quality0
Sequence length50
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGGGGGGGATGCGTGCATTTATCAGAAAAAAAAAAAAAAAGATCGGAAG14294582.0801317656309033No Hit
CCGGGGGGGGATGCGTGCATTTATCAGAAAAAAAAAAAAAAAGATCGGAA6732400.9796915403553998No Hit
GGGGGGCCGCCGGTGAAATACCACTACTCTCAAAAAAAAAAAAAAAGATC6332750.9215349061531786No Hit
CGGGGGGGGATGCGTGCATTTATCAAAAAAAAAAAAAAAGATCGGAAGAG4366290.6353777814357999No Hit
GGGGGGCCGCCGGTGAAATACCACTACTCTCATAAAAAAAAAAAAAAAGA3643910.5302578279389885No Hit
CCCCCCCGCGGACGCTACGCCGCGACGAGTAAAAAAAAAAAAAAAGATCG3397370.49438159474440396No Hit
GCCCCCCGCGGACGCTACGCCGCGACGAGTAAAAAAAAAAAAAAAGATCG3271690.4760927775630323No Hit
CCCCCCGCGGACGCTACGCCGCGACGAGTAAAAAAAAAAAAAAAGATCGG3178640.462552242563616No Hit
GCCCCCGCGGACGCTACGCCGCGACGAGTAAAAAAAAAAAAAAAGATCGG2661240.3872607561724503No Hit
CCGGGGGGGGATGCGTGCATTTATCAAAAAAAAAAAAAAAGATCGGAAGA2652590.3860020175615428No Hit
GGGGGGGGATGCGTGCATTTATCAGAAAAAAAAAAAAAAAGATCGGAAGA2641740.38442313733861244No Hit
CCGGGGCCGCCGGTGAAATACCACTACTCTCAAAAAAAAAAAAAAAGATC2619150.38113586505879715No Hit
CGCCCCGCGGACGCTACGCCGCGACGAGTAAAAAAAAAAAAAAAGATCGG2521130.3668721010540386No Hit
CGGGGGCCGCCGGTGAAATACCACTACTCTCAAAAAAAAAAAAAAAGATC2386060.3472168612649881No Hit
GCGGGGCCGCCGGTGAAATACCACTACTCTCAAAAAAAAAAAAAAAGATC2318160.33733612696664994No Hit
CGCCCCCGCGGACGCTACGCCGCGACGAGTAAAAAAAAAAAAAAAGATCG2272850.3307426649481271No Hit
CGGGGGGGGATGCGTGCATTTATCAGAAAAAAAAAAAAAAGATCGGAAGA2095910.30499454820662564No Hit
CCCCTCGCTTCTGGCGCCAAGCGTCCGAAAAAAAAAAAAAAAGATCGGAA1992850.28999736887250593No Hit
GGCCCCGCGGACGCTACGCCGCGACGAGTAAAAAAAAAAAAAAAGATCGG1897640.27614251301764914No Hit
GGGCGACGAAGCCGAGCGCACGGGGTCGGCGGCGAAAAAAAAAAAAAAAG1897490.2761206851804658No Hit
CGCCTCGCTTCTGGCGCCAAGCGTCCGAAAAAAAAAAAAAAAGATCGGAA1856260.27012094033333056No Hit
CGGGGGGGTGGGGGCCGGGCCGCAAAAAAAAAAAAAAAGATCGGAAGAGC1848370.26897279609748537No Hit
GGGCGACGAAGCCGAGCGCACGGGGTCGGCGGCGATAAAAAAAAAAAAAA1836190.2672003757181959No Hit
GGCCCCCGCGGACGCTACGCCGCGACGAGTAAAAAAAAAAAAAAAGATCG1809680.2633426692933219No Hit
CGGGGGGGGATGCGTGCATTTATCAGAAAAAAAAAAAAAAAAGATCGGAA1741170.2533731684571047No Hit
CCCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAAAAG1734100.2523443497311953No Hit
CCGGGGGGGATGCGTGCATTTATCAGAAAAAAAAAAAAAAAGATCGGAAG1728800.2515730994840496No Hit
CGGCGACGAAGCCGAGCGCACGGGGTCGGCGGCGAAAAAAAAAAAAAAAG1722500.25065633032234813No Hit
CCGCGACGAAGCCGAGCGCACGGGGTCGGCGGCGAAAAAAAAAAAAAAAG1705710.2482130677469564No Hit
CGGCGACGAAGCCGAGCGCACGGGGTCGGCGGCGATAAAAAAAAAAAAAA1643380.239142873802694No Hit
CCGCGACGAAGCCGAGCGCACGGGGTCGGCGGCGATAAAAAAAAAAAAAA1639460.2385724396576353No Hit
GCCCTCGCTTCTGGCGCCAAGCGTCCGAAAAAAAAAAAAAAAGATCGGAA1594790.23207210974442818No Hit
CCGGGGCCGCCGGTGAAATACCACTACTCTCATAAAAAAAAAAAAAAAGA1487490.2164579302125919No Hit
GCGCGACGAAGCCGAGCGCACGGGGTCGGCGGCGAAAAAAAAAAAAAAAG1465070.21319539614825112No Hit
GCGGGGGGGATGCGTGCATTTATCAGAAAAAAAAAAAAAAAGATCGGAAG1458930.21230191001287857No Hit
GGCCTCGCTTCTGGCGCCAAGCGTCCGAAAAAAAAAAAAAAAGATCGGAA1457580.21210545947822826No Hit
CCCCGACGAAGCCGAGCGCACGGGGTCGGCGGCGAAAAAAAAAAAAAAAG1450190.21103007469966098No Hit
CCGGGGGGGGGATGCGTGCATTTATCAGAAAAAAAAAAAAAAAGATCGGA1429240.20798145343971716No Hit
CCCCGACGAAGCCGAGCGCACGGGGTCGGCGGCGATAAAAAAAAAAAAAA1405500.20452683440816272No Hit
GCGCGACGAAGCCGAGCGCACGGGGTCGGCGGCGATAAAAAAAAAAAAAA1405460.20452101365158049No Hit
CGGGGGCCGCCGGTGAAATACCACTACTCTCATAAAAAAAAAAAAAAAGA1356200.19735275192056226No Hit
CGGGGGGGATGCGTGCATTTATCAGAAAAAAAAAAAAAAAGATCGGAAGA1332450.19389667769986227No Hit
GCGGGGCCGCCGGTGAAATACCACTACTCTCATAAAAAAAAAAAAAAAGA1320820.19220429272357845No Hit
CGCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAAAAG1269080.18467514408446187No Hit
GGGGGGCCGCCGGTGAAATACCACTACTCCCAAAAAAAAAAAAAAAGATC1264840.1840581438867453No Hit
CGCCGACGAAGCCGAGCGCACGGGGTCGGCGGCGAAAAAAAAAAAAAAAG1170350.17030806165036871No Hit
CGCCGACGAAGCCGAGCGCACGGGGTCGGCGGCGATAAAAAAAAAAAAAA1156520.16829553506206213No Hit
GGCCGACGAAGCCGAGCGCACGGGGTCGGCGGCGAAAAAAAAAAAAAAAG1013360.14746304725425527No Hit
CGCGACGAAGCCGAGCGCACGGGGTCGGCGGCGAAAAAAAAAAAAAAAGA1006150.14641385588030803No Hit
GGCCGACGAAGCCGAGCGCACGGGGTCGGCGGCGATAAAAAAAAAAAAAA991520.1442849141603568No Hit
CCGGGGGGGGATGCGTGCATTTATCAGAAAAAAAAAAAAAAGATCGGAAG980470.14267693015451532No Hit
CCGCGCGCCGGGCCGTACCCATATCCGCAGCAAAAAAAAAAAAAAAGATC975710.14198426012122978No Hit
GGGGGGGCTCTCGCTTCTGGCGCCAAGCGTCCGAAAAAAAAAAAAAAAGA956240.13915100685482854No Hit
GGGGGGCCGCCGGTGAAATACCACTACTCTCAAAAAAAAAAAAAAGATCG889790.12948127498259632No Hit
GCCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAAAAG872230.12692596284299662No Hit
CCCCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAAAAAAAG870780.12671496041689073No Hit
GGCGACGAAGCCGAGCGCACGGGGTCGGCGGCGAAAAAAAAAAAAAAAGA852700.12408397844172205No Hit
CGCGACGAAGCCGAGCGCACGGGGTCGGCGGCGATAAAAAAAAAAAAAAA842010.12252838124512065No Hit
GGGGGGCCGCCGGTGAAATACCACTACTCTCAAAAAAAAAAAAAAAAGAT826060.12020735455795582No Hit
CCGGGGGGGGATGCGTGCATTTATCAGAAAAAAAAAAAAAAAAGATCGGA811830.11813662040382693No Hit
CGCCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAAAAAAAG809530.11780192690034862No Hit
GGGGGGAGGTGGAGCACGAGCGTAAAAAAAAAAAAAAAGATCGGAAGAGC787890.1146528975893613No Hit
CGGGGGGGTGGGGGCCGGGCCGAAAAAAAAAAAAAAAGATCGGAAGAGCA785560.11431383851844633No Hit
GCCCGACGAAGCCGAGCGCACGGGGTCGGCGGCGAAAAAAAAAAAAAAAG742150.10799686243757947No Hit
GCCCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAAAAAAAG741390.1078862680625171No Hit
GCGCGCGCCGGGCCGTACCCATATCCGCAGCAAAAAAAAAAAAAAAGATC730760.10633940200078904No Hit
CCGCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAAAAG723260.10524801014162061No Hit
GCCCGACGAAGCCGAGCGCACGGGGTCGGCGGCGATAAAAAAAAAAAAAA719010.1046295547547585No Hit
GGCGACGAAGCCGAGCGCACGGGGTCGGCGGCGATAAAAAAAAAAAAAAA716380.10424684000947679No Hit
CGGGGGGGGCCCAAGTCCTTCTGATCGAGGCCAAAAAAAAAAAAAAAGAT705120.10260829703157859No Hit
GGGGGGGGATGCGTGCATTTATCAAAAAAAAAAAAAAAGATCGGAAGAGC704280.10248606114335171No Hit
GGCCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAAAAAAAG703110.10231580401332144No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)