FastQCFastQC Report
Wed 30 Aug 2023
SRR12432007.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR12432007.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences92328685
Total Bases4.6 Gbp
Sequences flagged as poor quality0
Sequence length50
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGGGGGGTGGGGGCCGGGCCGCCCCTCCCACGGCGCGACCGCTCTAAAA30062353.2560140978938454No Hit
CGGGGGGGTGGGGGCCGGGCCGCCCCTCCCACGGCGCGACCGCTCAAAAA14608011.5821745972012924No Hit
GGGGGGGCTCTCGCTTCTGGCGCCAAGCGTCCGTCCAAAAAAAAAAAAAA10897601.1803049074077032No Hit
CCGGGGGGTGGGGGCCGGGCCGCCCCTCCCACGGCGCGACCGCTCTAAAA10679831.1567185214432545No Hit
CCCCTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACAAAAAAAAAAA9931831.0757036125880055No Hit
CCGGGGGCTCTCGCTTCTGGCGCCAAGCGTCCGTCCAAAAAAAAAAAAAA9415981.0198325688273369No Hit
CGGGGGGGTGGGGGCCGGGCCGCCCCTCCCACGGCGCGACCGCTAAAAAA8011530.8677184127554725No Hit
GCGGGGGGTGGGGGCCGGGCCGCCCCTCCCACGGCGCGACCGCTCTAAAA7711680.8352420485572821No Hit
GGGGGCTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACAAAAAAAAA7616270.8249083153301707No Hit
GCGGGGGCTCTCGCTTCTGGCGCCAAGCGTCCGTCCAAAAAAAAAAAAAA7405080.8020346006227643No Hit
CGCCTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACAAAAAAAAAAA7287100.7892563399987772No Hit
CGGGGGGCTCTCGCTTCTGGCGCCAAGCGTCCGTCCAAAAAAAAAAAAAA7185600.778263006778446No Hit
CGGGGGGTGGGGGCCGGGCCGCCCCTCCCACGGCGCGACCGCTCTAAAAA6617180.7166981745705574No Hit
GCCCTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACAAAAAAAAAAA5473330.5928092661560164No Hit
GGCCTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACAAAAAAAAAAA5271830.5709850627678711No Hit
CCGGGGGGTGGGGGCCGGGCCGCCCCTCCCACGGCGCGACCGCTCAAAAA5247520.5683520782300755No Hit
GGGGGGGCTCTCGCTTCTGGCGCCAAGCGTCCGAAAAAAAAAAAAAAAGA5011620.5428020555042022No Hit
CGGGGGGGTGGGGGCCGGGCCGCCCCTCCCACGGCGCGACCGCTCCAAAA4768300.516448382211877No Hit
CGGGGGGGTGGGGGCCGGGCCGCCCCTCCCACGGCGCGACCGCCCAAAAA4401960.4767705724391071No Hit
CCGGGGGCTCTCGCTTCTGGCGCCAAGCGTCCGAAAAAAAAAAAAAAAGA4349280.47106487003470265No Hit
CCGCTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACAAAAAAAAAAA4345670.47067387562164453No Hit
CCGGGCTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACAAAAAAAAA4142440.4486622981795961No Hit
GCGGGGGGTGGGGGCCGGGCCGCCCCTCCCACGGCGCGACCGCTCAAAAA3774090.4087667879164531No Hit
CCGGGGGTGGGGGCCGGGCCGCCCCTCCCACGGCGCGACCGCTCTAAAAA3529740.3823015566613994No Hit
GCGGGGGCTCTCGCTTCTGGCGCCAAGCGTCCGAAAAAAAAAAAAAAAGA3425660.3710287869907386No Hit
CGGGGGGCTCTCGCTTCTGGCGCCAAGCGTCCGAAAAAAAAAAAAAAAGA3276510.35487454413544395No Hit
CGGCTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACAAAAAAAAAAA3266590.3538001218147968No Hit
CGGGGGGGGATGCGTGCATTTATCAGATCAAAACCAAAAAAAAAAAAAAA3202470.34685536786319443No Hit
CGGGGGGTGGGGGCCGGGCCGCCCCTCCCACGGCGCGACCGCTCAAAAAA3190250.3455318355286875No Hit
CCCCTTTGGTGACTCTAGATAACCTCGGGCCGATCGCAAAAAAAAAAAAA3149220.34108792949883343No Hit
GGGCTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACAAAAAAAAAAA2962320.320845033155189No Hit
GCGGGCTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACAAAAAAAAA2931320.31748746340316664No Hit
GGGGGCTTTGGTGACTCTAGATAACCTCGGGCCGATCGCAAAAAAAAAAA2876450.31154456494208704No Hit
CCGGGGGGTGGGGGCCGGGCCGCCCCTCCCACGGCGCGACCGCTAAAAAA2866910.3105112999280776No Hit
GCCCCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGAAAAA2685230.29083377500719304No Hit
GCGCTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACAAAAAAAAAAA2619750.2837417212213084No Hit
CGGGGGGGTGGGGGCCGGGCCGCCCCTCCCACGGCGCGACCGCAAAAAAA2606360.28229146770583813No Hit
GCGGGGGTGGGGGCCGGGCCGCCCCTCCCACGGCGCGACCGCTCTAAAAA2590490.280572608610206No Hit
CGCCCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGAAAAA2579330.279363883499478No Hit
CCGGGGGGGGATGCGTGCATTTATCAGATCAAAACCAAAAAAAAAAAAAA2458680.2662964386420103No Hit
GGGGGGGCTCTCGCTTCTGGCGCCAAGCGTCCGTCAAAAAAAAAAAAAAA2449990.2653552360244273No Hit
CCGCCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGAAAAA2384890.25830433954518034No Hit
CGCCTTTGGTGACTCTAGATAACCTCGGGCCGATCGCAAAAAAAAAAAAA2235720.24214793051585215No Hit
CCGGGGGGGGATGCGTGCATTTATCAGAAAAAAAAAAAAAAAGATCGGAA2210840.23945321001810002No Hit
CGGGGCTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACAAAAAAAAA2086210.22595469652795336No Hit
CCGGGGGCTCTCGCTTCTGGCGCCAAGCGTCCGTCAAAAAAAAAAAAAAA2085050.22582905843400672No Hit
CCCCCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGAAAAA2060060.22312242397906998No Hit
GCGGGGGGTGGGGGCCGGGCCGCCCCTCCCACGGCGCGACCGCTAAAAAA2033440.22023924634039788No Hit
GGCCCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGAAAAA2029350.21979626375053432No Hit
CCGGGGGGGGGATGCGTGCATTTATCAGATCAAAACCAAAAAAAAAAAAA1783040.19311874744019153No Hit
GCCCTTTGGTGACTCTAGATAACCTCGGGCCGATCGCAAAAAAAAAAAAA1748040.18932794288145663No Hit
CCGCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGAAAAAA1741490.1886185208854648No Hit
CGGGGGGTGGGGGCCGGGCCGCCCCTCCCACGGCGCGACCGCTAAAAAAA1731120.1874953596490625No Hit
GCGCCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGAAAAA1723800.18670253995277847No Hit
CCGGGGGGTGGGGGCCGGGCCGCCCCTCCCACGGCGCGACCGCTCCAAAA1701030.18423635081556725No Hit
CCGGGGGTGGGGGCCGGGCCGCCCCTCCCACGGCGCGACCGCTCAAAAAA1688860.18291823391614426No Hit
GGCCTTTGGTGACTCTAGATAACCTCGGGCCGATCGCAAAAAAAAAAAAA1663200.1801390326310832No Hit
GCGGGGGCTCTCGCTTCTGGCGCCAAGCGTCCGTCAAAAAAAAAAAAAAA1641720.17781256171903673No Hit
CGGGGGGCTCTCGCTTCTGGCGCCAAGCGTCCGTCAAAAAAAAAAAAAAA1589320.17213718575110215No Hit
CGGGCTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACAAAAAAAAAA1577110.17081473650361206No Hit
CGGGGGGGGATGCGTGCATTTATCAGAAAAAAAAAAAAAAAGATCGGAAG1572110.17027319299522137No Hit
CCGGGCTTTGGTGACTCTAGATAACCTCGGGCCGATCGCAAAAAAAAAAA1548660.16773335394086897No Hit
CCGGGGGGTGGGGGCCGGGCCGCCCCTCCCACGGCGCGACCGCCCAAAAA1534360.16618453950687156No Hit
CCGCTTTGGTGACTCTAGATAACCTCGGGCCGATCGCAAAAAAAAAAAAA1396400.1512422710233553No Hit
GCCCCCCCCGGGCCGCGGTAAAAAAAAAAAAAAAGATCGGAAGAGCACAC1391880.15075271569177012No Hit
CCGCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCAAAAAAAAAAAAAAA1375170.1489428772867284No Hit
CCGGGGGGGGATGCGTGCATTTATCAAAAAAAAAAAAAAAGATCGGAAGA1332780.144351671422592No Hit
CGGGGGGGTGGGGGCCGGGCCGCCCCTCCCACGGCGCGACCGCCAAAAAA1323400.14333573580085104No Hit
GCCCCCCGCCCCTTGCCTCTCGGCGCCCCAAAAAAAAAAAAAAAGATCGG1279930.1386275565389023No Hit
GCGGGGGTGGGGGCCGGGCCGCCCCTCCCACGGCGCGACCGCTCAAAAAA1242430.13456598022597202No Hit
CGGCTTTGGTGACTCTAGATAACCTCGGGCCGATCGCAAAAAAAAAAAAA1213590.13144235726957446No Hit
GGGGGGCTCTCGCTTCTGGCGCCAAGCGTCCGTCCAAAAAAAAAAAAAAA1213060.13138495365768504No Hit
GCGCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGAAAAAA1212890.13136654117839977No Hit
GCGGGGGGTGGGGGCCGGGCCGCCCCTCCCACGGCGCGACCGCTCCAAAA1201220.13010257862981586No Hit
GGGGGGGCTCTCGCTTCTGGCGCCAAGCGTCCGTAAAAAAAAAAAAAAAG1199900.12995961114360072No Hit
CGGCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGAAAAAA1199670.12993470014221475No Hit
CCGCGGCTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACAAAAAAAA1197920.12974515991427799No Hit
GGGCTTTGGTGACTCTAGATAACCTCGGGCCGATCGCAAAAAAAAAAAAA1177520.12753566240004394No Hit
GCCGGCTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACAAAAAAAAA1174640.1272237333392109No Hit
CGCGGCTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACAAAAAAAAA1149640.12451601579725738No Hit
CCCGGCTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACAAAAAAAAA1144230.12393006572117864No Hit
CGGCCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGAAAAA1136910.12313724602489465No Hit
CCCCCCCCCGGGCCGCGGTAAAAAAAAAAAAAAAGATCGGAAGAGCACAC1126350.12199350613517349No Hit
GCGGGCTTTGGTGACTCTAGATAACCTCGGGCCGATCGCAAAAAAAAAAA1101880.11934319220510939No Hit
GGGGGCTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACGCCCAAAAA1097970.11891970518154787No Hit
GCGGGGGGTGGGGGCCGGGCCGCCCCTCCCACGGCGCGACCGCCCAAAAA1094940.11859152981546309No Hit
GCCCCCCCGCCGGGCGAAAAAAAAAAAAAAAGATCGGAAGAGCACACGTC1075530.11648925791589038No Hit
GGGCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGAAAAAA1067750.11564661621683446No Hit
CGGGGGGGGATGCGTGCATTTATCAGATCAAAAAAAAAAAAAAAGATCGG1066440.11550473181763608No Hit
GGGCCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGAAAAA1060740.11488737221807069No Hit
CGGGGGGTGGGGGCCGGGCCGCCCCTCCCACGGCGCGACCGCTCCAAAAA1054090.11416711935191105No Hit
CCCTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACAAAAAAAAAAAA1042200.11287932888895796No Hit
CGCCCCCGCCCCTTGCCTCTCGGCGCCCCAAAAAAAAAAAAAAAGATCGG1042030.11286091640967269No Hit
CCGGGGGGGGATGCGTGCATTTATCAGATAAAAAAAAAAAAAAAGATCGG1040570.11270278570522259No Hit
CCGGGGGCTCTCGCTTCTGGCGCCAAGCGTCCGTAAAAAAAAAAAAAAAG1030280.11158828916495453No Hit
GGGCGGCTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACAAAAAAAA1022740.11077164155430136No Hit
CCGCGGGCGTGGGGGTGGGGGCCGGGCCGCCCCTCCCACGGCGCGACCGC1003700.10870944387434955No Hit
CGGGGGGGTGGGGGCCGGGCCGCCCCTCCCACGGCGCGACCGCTCGAAAA999540.1082588796753685No Hit
CGGGGGGTGGGGGCCGGGCCGCCCCTCCCACGGCGCGACCGCCCAAAAAA957720.10372940977118866No Hit
CGGCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCAAAAAAAAAAAAAAA957570.10371316346593695No Hit
GCGCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCAAAAAAAAAAAAAAA952840.10320086330699935No Hit
CCCCCCCCGCCGGGCGAAAAAAAAAAAAAAAGATCGGAAGAGCACACGTC943640.10220442325156044No Hit
CCGGGGGGTGGGGGCCGGGCCGCCCCTCCCACGGCGCGACCGCAAAAAAA939080.10171053557190812No Hit
CGGCGGCTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACAAAAAAAA935590.10133253820305141No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)