FastQCFastQC Report
Tue 5 Sept 2023
SRR12513926_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR12513926_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences46570903
Total Bases1.1 Gbp
Sequences flagged as poor quality0
Sequence length10-47
%GC58

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGGCTGAGGCGTGATGACGAGGCAC1146775724.624295990137878No Hit
TAAGGCTGAGGCGTGATGACGAGGCAC22417594.813647268123618No Hit
TAGGCTGAGGCGTGATGACGAGGCAC20218764.341500528774373No Hit
AAGGCTGAGGCGTGATGACGAGGCA17696123.7998232501525684No Hit
AAAGGCTGAGGCGTGATGACGAGGCAC12701682.7273853805239723No Hit
AAGGCTGAGGCGTGATGACGAGGC11573852.4852105616247124No Hit
TAAGGCTGAGGCGTGATGACGAGGCA3840850.8247316999629576No Hit
CAGGCTGAGGCGTGATGACGAGGCAC3523940.7566827725028222No Hit
TAGGCTGAGGCGTGATGACGAGGCA3183260.6835297997120648No Hit
CAAGGCTGAGGCGTGATGACGAGGCAC3124770.6709704555224106No Hit
TATTCATCTCCGGGGGTAGAGCACTGTTTCGGC2645770.5681165340513152No Hit
TAAGGCTGAGGCGTGATGACGAGGC2585760.5552308058102288No Hit
TAGGCTGAGGCGTGATGACGAGGC2114380.45401309912328736No Hit
AAAGGCTGAGGCGTGATGACGAGGCA1892520.40637391119515115No Hit
AGGCTGAGGCGTGATGACGAGGCAC1777600.3816975590960734No Hit
AAGGCTGAGGCGTGATGAC1324090.28431701227695755No Hit
GGCTGAGGCGTGATGACGAGGCAC1285630.2760586368703222No Hit
AAAGGCTGAGGCGTGATGACGAGGC1218110.2615603137435407No Hit
GAGGCTGAGGCGTGATGACGAGGCAC1195610.25672897087694435No Hit
TATTCATCTCCGGGGGTAGAGC1184940.25443784072642955No Hit
ACGGTCCTAAGGTAGCG1178310.2530142050284058No Hit
TTAAGGCTGAGGCGTGATGACGAGGCAC1019070.21882118111388135No Hit
TTAGGCTGAGGCGTGATGACGAGGCAC863260.18536466857857575No Hit
TGATGACGAGGCAC854460.18347507670186253No Hit
GAAGGCTGAGGCGTGATGACGAGGCAC798150.1713838359543941No Hit
ACGGACGTGGGGGTTCAAGTCCCCCCCCTCGCACCA751530.1613732935348065No Hit
AAGGCTGAGGCGTGATGACGAGG727680.1562520700962144No Hit
CAAGGCTGAGGCGTGATGACGAGGCA639690.13735829859257828No Hit
TAAAGGCTGAGGCGTGATGACGAGGCAC635530.13646503697813203No Hit
AAGGCTGAGGCGTGAT611120.13122356678374908No Hit
TGGCTGAGGCGTGATGACGAGGCAC606090.13014349324512775No Hit
CAGGCTGAGGCGTGATGACGAGGCA577880.12408606292216408No Hit
AGAGCACTGTTTCGGC566910.12173051486676133No Hit
GATGACGAGGCAC563340.12096394179859471No Hit
CATTCATCTCCGGGGGTAGAGCACTGTTTCGGC509270.10935368807428966No Hit
TACGGACGTGGGGGTTCAAGTCCCCCCCCTCGCACCA509270.10935368807428966No Hit
TACTCATCTCCGGGGGTAGAGCACTGTTTCGGC500500.10747053798806522No Hit
AAGGCTGGGGCGTGATGACGAGGCAC483850.10389534426678393No Hit
GTGATGACGAGGCAC481700.10343368261508694No Hit
AAGGCTGAAGCGTGATGACGAGGCAC481270.10334135028474754No Hit
AAGGCTTAGGCGTGATGACGAGGCAC475320.10206372850446983No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)