FastQCFastQC Report
Sat 2 Sept 2023
SRR12660874.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR12660874.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences64758701
Total Bases1.9 Gbp
Sequences flagged as poor quality0
Sequence length1-68
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGG19607543.0277846370019064No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCAC11387221.7584077234656084No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGC7570331.1690058452531344No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGATCGCAC5339810.8245702766644439No Hit
CCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGG3156400.4874094061892934No Hit
CAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGG2997490.46287061872967467No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCAC1880500.2903856888667362No Hit
CACATATACTAAAATTGGAACGATACAGAGAAG1723570.2661526518266634No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCG1715710.26493891531270836No Hit
CACATATACTAAAATTGGAACGATACAGAGAAGA1695340.26179339205707663No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGAGA1528350.23600689581466436No Hit
CACATATACTAAAATTGGAACGATACAGAGAA1124730.17368013604843618No Hit
ATTGATCATCGACACTTCGAACGCA981320.1515348493478892No Hit
CACATATACTAAAATTGGAACGATACAGAGAAGAT887660.1370719279869434No Hit
ACATATACTAAAATTGGAACGATACAGAGAAG820820.1267505350362108No Hit
ACATATACTAAAATTGGAACGATACAGAGAAGA769320.11879793573994017No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG743950.11488031546525307No Hit
ACATATACTAAAATTGGAACGATACAGAGAAGAT671240.10365248061414943No Hit
CTGGCAATTTTTGACAGTCTCTACGGAGACTG661020.10207431430720021No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)