FastQCFastQC Report
Tue 5 Sept 2023
SRR12758959.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR12758959.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences35405757
Total Bases1.1 Gbp
Sequences flagged as poor quality0
Sequence length1-60
%GC61

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCC3370090.9518480285564859No Hit
CCCGTGGATCGCCTCAGCTGCGGCGGGCGTCGCGG1982790.5600190951996874No Hit
TTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCC1970660.5565930986873123No Hit
GCGCCGCTGGTGTAGTGGTATCATGCAAGATT1728490.4881946176154347No Hit
ATTAAAGCATCTGGCCTACACCCAGAAGATT1643280.4641279100458155No Hit
TCGTCCCCGCTCGGCGGGGTCCCCGCGTCGTCC1317800.3721993572966114No Hit
TCGACGAAGCCGAGCGCACGGGGTCGGCGGCGAT1192230.33673337361491806No Hit
GCCCGGATAGCTCAGTCGGTAGAGCATCAGAC1176530.3322990665049189No Hit
TCCCCGCCCCTTGCCTCTCGGCGCCCCC981780.2772938875448984No Hit
ATTAAAGCATCTGGCCTACACCCAGAAGATTT946520.26733505514371575No Hit
AGAGTGGCGCAGCGGAAGCGTGCTGGGC913220.2579298050314247No Hit
AGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCC785650.22189894146310726No Hit
TCTTGCGACCCGGGTTCGTTTCCCGGGCGGCGCAC780280.2203822389675216No Hit
CCGTGATCGTATAGTGGTTAGTACTCTGCGT762440.21534351037883473No Hit
TCCCCGCCCCTTGCCTCTCGGCGCCCCCT750460.21195987985795645No Hit
AGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCC740100.2090338020452437No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGGGAC674540.19051703936170608No Hit
GGGGGGTGGGGGCCGGGCCGCCCCTCCCACGGCGCGACC656220.18534273960022943No Hit
CCTCGGTTGGCCCCGGATAGCCGGGTCCCCGT654520.18486259169659894No Hit
GCGGGAGGCCCGGGTTCGTTTCCCGGCCAATGCAC644290.18197323107651675No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCC630120.17797105707978508No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCCT626610.1769796928787598No Hit
ACCTCACCCCGAGTGTTACAGCCCTCCGGCCGC622590.1758442843066454No Hit
ACCTCTAGCATTACAAGTATTAGAGGC612690.17304812886785617No Hit
TCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGG598550.16905442806942383No Hit
GGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCC595080.16807436146613106No Hit
CCGTGGATCGCCTCAGCTGCGGCGGGCGTCGCGG590040.16665086415183836No Hit
ACCCAGGCGGCCCGGGTTCGACTCCCGGTGTGGGAAC575070.16242273820045705No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC558920.15786133311596756No Hit
ATTCTTGCGACCCGGGTTCGTTTCCCGGGCGGCG558110.15763255676188478No Hit
TAACCTAGACTTACAAGTCAAAGTAAAAT550690.15553685238250944No Hit
GCGCCGGGTTTCGCCCCCGCGGCGTCGGGC549660.15524593924089802No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGAGAC547030.15450312218998735No Hit
CGGGGCCCGGTGGGGGGCGGGGCGGACTGT532750.15046987979949136No Hit
CCGTGGCGCAATGAAGGTGAAGGGCCCCG521310.14723876684800158No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCC508740.1436884967605692No Hit
CCGCGGCCCGGGTTCGTTTCCCGGTCAGGGAAC499230.14100249289967165No Hit
ACCTCACCCCGAGTGTTACAGCCCTCCGGCC485450.1371104704808317No Hit
AGCAGAGTGGCGCAGCGGAAGCGTGCTGGGC475940.13442446661993415No Hit
GCGACGAAGCCGAGCGCACGGGGTCGGCGGCGAT457730.12928123525222185No Hit
CCCGGATAGCTCAGTCGGTAGAGCATCAGAC453550.12810063628917748No Hit
AACCTAGACTTACAAGTCAAAGTAAAAT450120.12713186728361717No Hit
TCCGGCCGTGCCGGTGGCGGCGGATCTTTCCCGCTC445000.1256857747738595No Hit
CCGACGAAGCCGAGCGCACGGGGTCGGCGGCGAT443260.12519432927249655No Hit
TCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT437510.12357029959845231No Hit
GGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCC417000.11777745636112229No Hit
CCGTCCCCGCTCGGCGGGGTCCCCGCGTCGTCC406880.11491916413480441No Hit
AAGTTCAATTTTAAACTTGCTAAAAAAAC400120.113009870118015No Hit
CGGGAGGCCCGGGTTCGTTTCCCGGCCAATGCAC392120.11075035057151865No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCC385180.10879021736493305No Hit
TCCTCGGTTGGCCCCGGATAGCCGGGTCCCCGT382700.10808976630551918No Hit
AGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTC382240.10795984393159565No Hit
TCGCCGCGGCCCGGGTTCGTTTCCCGGTCAGGGAAC381990.10788923394576763No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT378390.10687245014984427No Hit
TCCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCC376620.10637253145018195No Hit
ATGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCC375340.10601100832274253No Hit
TGCAGTCCGCCCGGAGGATTCAACCCGGCGGCGCGC370070.10452254982148806No Hit
CCGGGGGCCCGAGGTGGGATCCCGAGGCCTCT363840.10276294897465403No Hit
TCCGGCCGTGCCGGTGGCGGCGGATCTTTCCCGCT355420.10038480465196663No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)