FastQCFastQC Report
Tue 5 Sept 2023
SRR12764758_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR12764758_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences47283375
Total Bases1.6 Gbp
Sequences flagged as poor quality0
Sequence length15-50
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGG8828101.8670621545099095No Hit
CAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGG4135030.874520907189895No Hit
CCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGG3350570.7086148144035826No Hit
CTCGCCGGCCGAGGTGGGATCCCGAGGCCTCT2655440.561601197038071No Hit
GCCGGGCGCGGTGGCGCGT1490700.31526937322050297No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCG1351750.2858827230501207No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGC1339080.28320313429403043No Hit
AGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGG1260460.2665757256118033No Hit
TTCTTGTTTTCTTAGGAATCATCAC1163770.24612667771706226No Hit
CAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGG973490.20588420348589756No Hit
CTCGCCGGCCGAGGTGGGATCCCGAGGCCTC959660.20295928537250146No Hit
AGACCGGGGTTCGATTCCCCGACGGGGAGC898120.18994413998577725No Hit
TGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGG845540.17882395239341525No Hit
AGGGGGTCCCCCCCGCGGGGGCGCGCCGGC839200.17748310056124378No Hit
GCCCCGGCCGGGGGGCGGGCGCCGGCG806200.17050390332754378No Hit
CTCGCCGGCCGAGGTGGGATCCCGAGGCCT801500.16950989644880468No Hit
TGGGAAACTCGACTGCATAATTTGTGGTAGTGGGGGA703130.14870554396762076No Hit
CTTGTTTTCTTAGGAATCATCAC685850.1450509825070651No Hit
ATTCTGCATTGTGCAAACTTTAATGTTTTATTCT685670.14501291415851766No Hit
AGACCGGGGTTCGATTCCCCGACGGGGAG652470.13799141875976492No Hit
TGGGAAACTCGACTGCATAATTTGTGGTAGTGGGGGACTG629490.13313135959520656No Hit
GCTCGCCGGCCGAGGTGGGATCCCGAGGCCTCT628900.133006580008301No Hit
TCTTGTTTTCTTAGGAATCATCAC607640.12851028506319612No Hit
CTGTCCCCGCCGGCGGGCCGCCTCGC602040.12732593644171974No Hit
TCGCCGGCCGAGGTGGGATCCCGAGGCCTCT596020.12605276167363266No Hit
TCGACTGCATAATTTGTGGTAGTGGGGGA588520.12446658048415538No Hit
CTCCTCGCCGCGCGGCGGCGGTGGCGGCGGGC565880.11967842820018663No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCGC537590.11369535275347836No Hit
CCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGC512670.10842500138790853No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCGCCCG506380.10709472409700027No Hit
GGCTGGTCCGATGGTAGTGGGTTATCAGAA496540.10501365437640608No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCGCC485210.10261746332616908No Hit
GGCTGGTCCGATGGTAGTGGGTTATCAGAAC476190.10070981608229108No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)