FastQCFastQC Report
Wed 6 Sept 2023
SRR12790129.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR12790129.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences44590822
Total Bases2.1 Gbp
Sequences flagged as poor quality0
Sequence length49
%GC36

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTGGTGACTCTAGATAACCTCGGGCCGATCGCAAAAAAAAAAAAAAAAA1761770.39509700000596537No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCAAAAAAAAAAAAAAAA1726990.3872971886456814No Hit
TCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAAAAAA871660.19547968862291884No Hit
ATGTACACGGAGTCGACCCGCAACGCAAAAAAAAAAAAAAAAAAAAAAA632410.14182514957898734No Hit
ATGTACACGGAGTCGACCCGCAACGCAAAAAAAAAAAAAAAAAAAACGG494680.11093762747858742No Hit
ATGTACACGGAGTCGACCCGCAACGCAAAAAAAAAAAAAAAAAAAAACG485750.10893497321040639No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA452990.10158816987047245No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)